miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00967;mir-281;AABS01000211.1/21157-21238 7719:Ciona intestinalis
Length = 82
Score = 145 bits (73), Expect = 1e-34
Identities = 82/84 (97%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 17 tgtccagtgcgtgtcggagagtaatttcatgttagtgacatcatactactgtcatggagt 76
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tgtccagtgcgtgtcggagagtaatttcatgttagtgacatc--actactgtcatggagt 58
Query: 77 tgctctcttattagcgctgaggcc 100
||||||||||||||||||||||||
Sbjct: 59 tgctctcttattagcgctgaggcc 82
>RF00967;mir-281;AACT01010893.1/2430-2512 51511:Ciona savignyi
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 65 ctgtcatggagttgctctcttattagcgct 94
|||||||||||||||||||| ||| |||||
Sbjct: 48 ctgtcatggagttgctctctcattggcgct 77
>RF00967;mir-281;ABEP02022249.1/34089-34173 7739:Branchiostoma
floridae (Florida lancelet)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 actgtcatggagttgctctctt 85
||||||||||||||||||||||
Sbjct: 51 actgtcatggagttgctctctt 72
>RF00967;mir-281;AAJJ01001668.1/5737-5811 7070:Tribolium castaneum
(red flour beetle)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 actgtcatggagttgctctctt 85
||||||||||||||||||||||
Sbjct: 44 actgtcatggagttgctctctt 65
