miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AACT01017860.1/11076-10991 51511:Ciona savignyi
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 10 ccacaatgaggtagtaggttatgcagtttttgccttgaatgtttttagaggcacaggagc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacaatgaggtagtaggttatgcagtttttgccttgaatgtttttagaggcacaggagc 60
Query: 70 tactgtgtaaccttctgcctttgtgg 95
||||||||||||||||||||||||||
Sbjct: 61 tactgtgtaaccttctgcctttgtgg 86
>RF00027;let-7;AACT01004141.1/16436-16352 51511:Ciona savignyi
Length = 85
Score = 155 bits (78), Expect = 1e-37
Identities = 85/86 (98%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 10 ccacaatgaggtagtaggttatgcagtttttgccttgaatgtttttagaggcacaggagc 69
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ccacaatgaggtagtaggttatgcagtttttgccttgaatg-ttttagaggcacaggagc 59
Query: 70 tactgtgtaaccttctgcctttgtgg 95
||||||||||||||||||||||||||
Sbjct: 60 tactgtgtaaccttctgcctttgtgg 85
>RF00027;let-7;AABS01000138.1/96188-96277 7719:Ciona intestinalis
Length = 90
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 60 gcacaggagctactgtgtaaccttctgcctttgtgg 95
||||||||| ||||||||||||||||||||||||||
Sbjct: 55 gcacaggagatactgtgtaaccttctgcctttgtgg 90
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 ccacaatgaggtagtaggttatgcagtt 37
||||||||||||||||||||||||||||
Sbjct: 1 ccacaatgaggtagtaggttatgcagtt 28
>RF00027;let-7;AABS01000138.1/97106-97190 7719:Ciona intestinalis
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 atgaggtagtaggttatgcagtttt 39
|||||||||||||||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagtttt 30
>RF00027;let-7;AACT01017860.1/7776-7693 51511:Ciona savignyi
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 atgaggtagtaggttatgcagttt 38
||||||||||||||||||||||||
Sbjct: 6 atgaggtagtaggttatgcagttt 29
