miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 19 cttgtgacggttgttggtaaagaggatcgaacctggaaaatgatggtttggtccccttca 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgtgacggttgttggtaaagaggatcgaacctggaaaatgatggtttggtccccttca 60
Query: 79 accagctaccgatgcaacgca 99
|||||||||||||||||||||
Sbjct: 61 accagctaccgatgcaacgca 81
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 atggtttggtccccttcaaccagct 85
|||||||||||||||||||||||||
Sbjct: 52 atggtttggtccccttcaaccagct 76
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 ggtttggtccccttcaaccagctac 87
|||||||||||||||||||||||||
Sbjct: 50 ggtttggtccccttcaaccagctac 74
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 ggtttggtccccttcaaccagctac 87
|||||||||||||||||||||||||
Sbjct: 51 ggtttggtccccttcaaccagctac 75
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 ggtttggtccccttcaaccagctac 87
|||||||||||||||||||||||||
Sbjct: 51 ggtttggtccccttcaaccagctac 75
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 ggtttggtccccttcaaccagcta 86
||||||||||||||||||||||||
Sbjct: 50 ggtttggtccccttcaaccagcta 73
