miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>25433_pma-mir-18a:mirbase
          Length = 97

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 1  gtgcttgcttgtgtaaaggtgcatttagtgcagatagt 38
          |||||||||||||  ||||||||| |||||||||||||
Sbjct: 4  gtgcttgcttgtgctaaggtgcatctagtgcagatagt 41




>34212_dre-mir-18b:mirbase
          Length = 87

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||||||||||||||||||
Sbjct: 14 aaggtgcatttagtgcagatagtg 37




>25705_xtr-mir-18a:mirbase
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 15 aaggtgcatctagtgcagatagtg 38




>25899_gga-mir-18a:mirbase
          Length = 93

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 15 aaggtgcatctagtgcagatagtg 38




>26404_tgu-mir-18a:mirbase
          Length = 72

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 12 aaggtgcatctagtgcagatagtg 35




>26628_cfa-mir-18a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 15 aaggtgcatctagtgcagatagtg 38




>26950_eca-mir-18a:mirbase
          Length = 61

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 2  aaggtgcatctagtgcagatagtg 25




>27337_mdo-mir-18:mirbase
          Length = 72

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 8  aaggtgcatctagtgcagatagtg 31




>27483_age-mir-18:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>27544_lla-mir-18:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>27592_sla-mir-18:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>27656_mml-mir-18:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>28175_mne-mir-18:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>28263_ggo-mir-18:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>28365_hsa-mir-18a:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>30047_ppa-mir-18:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>30152_ptr-mir-18a:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>30757_ppy-mir-18:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>31397_lca-mir-18:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>31780_mmu-mir-18a:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 18 aaggtgcatctagtgcagatagtg 41




>32664_rno-mir-18a:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 18 aaggtgcatctagtgcagatagtg 41




>33134_bta-mir-18a:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 7  aaggtgcatctagtgcagatagtg 30




>33917_ssc-mir-18a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 15 aaggtgcatctagtgcagatagtg 38




>34211_dre-mir-18a:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 12 aaggtgcatctagtgcagatagtg 35




>34550_fru-mir-18:mirbase
          Length = 76

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 8  aaggtgcatctagtgcagatagtg 31




>34698_tni-mir-18:mirbase
          Length = 76

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 aaggtgcatttagtgcagatagtg 39
          ||||||||| ||||||||||||||
Sbjct: 8  aaggtgcatctagtgcagatagtg 31