miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AAWZ01041387.1/1182-1261 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 gggtgccaaagtgcttatagtgcaggtagt 39
|||||| |||||||||||||||||||||||
Sbjct: 7 gggtgcaaaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;AAFR03056382.1/2050-2132 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 gtgccaaagtgcttatagtgcaggtagtt 40
||||||||||||| |||||||||||||||
Sbjct: 9 gtgccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;BX571778.7/42610-42528 10090:Mus musculus (house
mouse)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 gtgccaaagtgcttatagtgcaggtagtt 40
||||||||||||| |||||||||||||||
Sbjct: 9 gtgccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;CAAB01000095.1/4903-4823 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtagttgatcttagtctactgcattttgagcactt 69
|||||||||||||||||||||||| | | |||||||||| | |||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagttactgatggtctactgcagtgtgagcactt 66
>RF00051;mir-17;CAAK05051440.1/15885-15799 7955:Danio rerio
(zebrafish)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtagtt 40
||||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagtt 37
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 tgccaaagtgcttatagtgcaggtagtt 40
|||||||||||||| |||||||||||||
Sbjct: 10 tgccaaagtgcttacagtgcaggtagtt 37
>RF00051;mir-17;BAAE01210639.1/1988-1907 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtagtt 40
||||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagtt 37
>RF00051;mir-17;AABR04092601.1/7810-7728 10116:Rattus norvegicus
(Norway rat)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gtgccaaagtgcttatagtgcaggtag 38
||||||||||||| |||||||||||||
Sbjct: 9 gtgccaaagtgctcatagtgcaggtag 35
>RF00051;mir-17;CR390304.1/91-171 9031:Gallus gallus (chicken)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtagt 39
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;CAAE01014581.1/3627532-3627453 99883:Tetraodon
nigroviridis
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtagt 39
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;ABPJ01018453.1/475-563 35575:Mchenga conophoros
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtagt 39
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;AANH01000396.1/151070-150987 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtagt 39
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;BAAF04006740.1/10036-9953 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtagt 39
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1896-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 ccaaagtgcttatagtgcaggtagtt 40
|||||||||| |||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;AAFR03056382.1/1545-1623 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaagtgcttatagtgcaggtag 38
||||||||||||||||||||||
Sbjct: 14 aaagtgcttatagtgcaggtag 35
>RF00051;mir-17;AY866359.1/938-1020 9593:Gorilla gorilla (Western
Gorilla)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 ccaaagtgcttatagtgcaggtagtt 40
|||||||||| |||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;AAGW01169230.1/2042-2124 9986:Oryctolagus
cuniculus (rabbit)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 ccaaagtgcttatagtgcaggtagtt 40
|||||||||| |||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;AAIY01238597.1/3382-3300 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 ccaaagtgcttatagtgcaggtagtt 40
|||||||||| |||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;ABRQ01318667.1/1268-1186 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 ccaaagtgcttatagtgcaggtagtt 40
|||||||||| |||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
