miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 212 aaagctaaaacaacttaaaatttggaacggagggagtaga 251
||||| |||||| |||| ||||||||||||||||||||||
Sbjct: 42 aaagccaaaacatcttacaatttggaacggagggagtaga 3
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 54.0 bits (27), Expect = 1e-06
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 213 aagctaaaacaacttaaaatttggaacggagggagtaga 251
|||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 41 aagccaaaacgacttacaatttggaacggagggagtaga 3
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 52.0 bits (26), Expect = 4e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 212 aaagctaaaacaacttaaaatttggaacggagggagta 249
||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 42 aaagccaaaacaacttacaatttggaatggagggagta 5
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 218 aaaacaacttaaaatttggaacggagggagta 249
|||||| |||| ||||||||||||||||||||
Sbjct: 36 aaaacaccttacaatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 223 aacttaaaatttggaacggagggagtag 250
|||||| |||||||||||||||||||||
Sbjct: 31 aacttataatttggaacggagggagtag 4
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 218 aaaacaacttaaaatttggaacggagggagta 249
||||||||||| |||||||||| |||||||||
Sbjct: 36 aaaacaacttataatttggaacagagggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 224 acttaaaatttggaacggagggagtag 250
||||| |||||||||||||||||||||
Sbjct: 129 acttataatttggaacggagggagtag 155
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 218 aaaacaacttaaaatttggaacggagggagta 249
||||| ||||| ||||||||||||||||||||
Sbjct: 36 aaaacgacttataatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 224 acttaaaatttggaacggagggagtag 250
||||| |||||||||||||||||||||
Sbjct: 30 acttataatttggaacggagggagtag 4
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 224 acttaaaatttggaacggagggagtag 250
||||| |||||||||||||||||||||
Sbjct: 129 acttataatttggaacggagggagtag 155
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 224 acttaaaatttggaacggagggagtag 250
||||| |||||||||||||||||||||
Sbjct: 30 acttacaatttggaacggagggagtag 4
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 225 cttaaaatttggaacggagggagtag 250
|||| |||||||||||||||||||||
Sbjct: 81 cttataatttggaacggagggagtag 106
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 224 acttaaaatttggaacggagggagta 249
||||| ||||||||||||||||||||
Sbjct: 30 acttataatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 224 acttaaaatttggaacggagggagta 249
||||| ||||||||||||||||||||
Sbjct: 129 acttataatttggaacggagggagta 154
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 224 acttaaaatttggaacggagggagta 249
||||| ||||||||||||||||||||
Sbjct: 30 acttataatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 0.001
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 212 aaagctaaaacaacttaaaatttggaacggagggagta 249
||||| ||||| |||| ||||||||||||||||||||
Sbjct: 74 aaagccaaaacgtcttataatttggaacggagggagta 111
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 224 acttaaaatttggaacggagggagta 249
||||| ||||||||||||||||||||
Sbjct: 30 acttataatttggaacggagggagta 5
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 230 aatttggaacggagggagtaga 251
||||||||||||||||||||||
Sbjct: 112 aatttggaacggagggagtaga 133
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 230 aatttggaacggagggagtaga 251
||||||||||||||||||||||
Sbjct: 91 aatttggaacggagggagtaga 112
