miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26976_eca-mir-30c:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtgag 40
||||||||||||| ||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctgtgag 45
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtgag 40
||||||||||||| ||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctgtgag 45
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtgag 40
||||||||||||| ||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctgtgag 45
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtgag 40
||||||||||||| ||||||||||||||||
Sbjct: 15 gtgtaaacatcctacactctcagctgtgag 44
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtgag 40
||||||||||||| ||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctgtgag 45
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtgag 40
||||||||||||| ||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctgtgag 45
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtgag 40
||||||||||||| ||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctgtgag 45
>33167_bta-mir-30c:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtgag 40
||||||||||||| ||||||||||||||||
Sbjct: 25 gtgtaaacatcctacactctcagctgtgag 54
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtgag 40
||||||||||||| ||||||||||||||||
Sbjct: 9 gtgtaaacatcctacactctcagctgtgag 38
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctgtga 39
||||||||||||| |||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctgtga 44
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtgag 40
|||||||||||| ||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtgag 29
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtga 39
|||||||||||| |||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtga 44
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtga 39
|||||||||||| |||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtga 41
>32691_rno-mir-30c-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtga 39
|||||||||||| |||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtga 41
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtg 40
>25919_gga-mir-30c-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>26425_tgu-mir-30c:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>27556_lla-mir-30c:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>27684_mml-mir-30c-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>28192_mne-mir-30c:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctgtg 33
>33943_ssc-mir-30c-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||||||| ||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36
>31452_oan-mir-30c:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgt 37
|||||||||||| |||||||||||||
Sbjct: 31 tgtaaacatcctacactctcagctgt 56
>34249_dre-mir-30c:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gtgtaaacatccttcactctcagctg 36
||||||||||||| ||||||||||||
Sbjct: 10 gtgtaaacatcctacactctcagctg 35
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||| ||| ||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36
>33170_bta-mir-30f:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 12 tgtaaacatccttcactctcagctgtg 38
|||||||| ||| ||||||||||||||
Sbjct: 14 tgtaaacaccctacactctcagctgtg 40
