miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AANH01004216.1/19959-19891 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 ctgtggtgcattgtagttgcattgtatgg 39
|||||||||||||||||||||||| ||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgg 29
>RF00667;mir-33;AC105358.8/20002-19934 10090:Mus musculus (house
mouse)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctgtggtgcattgtagttgcattg 34
||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattg 24
>RF00667;mir-33;CAAE01014738.1/1624047-1623979 99883:Tetraodon
nigroviridis
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctgtggtgcattgtagttgcattg 34
||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattg 24
>RF00667;mir-33;CAAB01001000.1/62134-62064 31033:Takifugu rubripes
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctgtggtgcattgtagttgcattg 34
||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattg 24
>RF00667;mir-33;AANH01011106.1/1499-1563 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 65
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctgtggtgcattgtagttgcattg 34
||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattg 24
>RF00667;mir-33;AANH01004390.1/133329-133397 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctgtggtgcattgtagttgcattg 34
||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattg 24
>RF00667;mir-33;BAAE01000948.1/5094-5161 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ctgtggtgcattgtagttgcattg 34
||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattg 24
>RF00667;mir-33;ABRP01241176.1/6014-5945 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 gtggtgcattgtagttgcattg 34
||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattg 24
