miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42370_osa-MIR2124a:mirbase
Length = 249
Score = 101 bits (51), Expect = 1e-22
Identities = 119/139 (85%), Gaps = 2/139 (1%)
Strand = Plus / Plus
Query: 1 ttgcacagattgcgtgtattttgcgagacgaattttttgagcctaattagtccgtgatta 60
||||||||||||| |||| | ||||||||||| ||||||||||||||| || |||||
Sbjct: 48 ttgcacagattgcatgtaaatcgcgagacgaatcttttgagcctaattataccatgattt 107
Query: 61 gacaatgttgtgctacagtaaacatgtgctaatgatgggataattagtctttaataaatt 120
|||||||| ||||||||||||| || ||||||||| || ||||||| | ||||||||||
Sbjct: 108 gacaatgtggtgctacagtaaatatttgctaatgacggattaattaggc-ttaataaatt 166
Query: 121 cg-ctcacagtttacaggc 138
| ||| ||||||||||||
Sbjct: 167 tgtctcgcagtttacaggc 185
>42079_osa-MIR442:mirbase
Length = 233
Score = 89.7 bits (45), Expect = 5e-19
Identities = 101/117 (86%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 21 ttgcgagacgaattttttgagcctaattagtccgtgattagacaatgttgtgctacagta 80
||||||||||||| |||| ||||||||| ||| |||| |||||||| |||||||||||
Sbjct: 63 ttgcgagacgaatcttttaagcctaattgctccatgatctgacaatgtggtgctacagta 122
Query: 81 aacatgtgctaatgatgggataattagtctttaataaattcg-ctcacagtttacag 136
||||| ||||||||| || ||||||| | |||||||||||| ||| ||||||||||
Sbjct: 123 aacatttgctaatgacggattaattaggc-ttaataaattcgtctcgcagtttacag 178
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 22 tgcgagacgaattttttgagcctaattagtccgtgattag 61
|||||||||||||| || |||||||||| ||||| |||||
Sbjct: 170 tgcgagacgaatttattaagcctaattaatccgtcattag 131
>42374_osa-MIR2124e:mirbase
Length = 247
Score = 87.7 bits (44), Expect = 2e-18
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 4 cacagattgcgtgtattttgcgagacgaattttttgagcctaattagtccgtgattagac 63
|||| |||||||||| ||||||||||||| |||| ||||||||| ||| ||||| |||
Sbjct: 49 cacaaattgcgtgtaaattgcgagacgaatcttttaagcctaattgctccatgatttgac 108
Query: 64 aatgttgtgctacagtaaacatgtgctaatga 95
||||| |||||||| ||||||| |||||||||
Sbjct: 109 aatgtggtgctacaataaacatttgctaatga 140
>42376_osa-MIR2124g:mirbase
Length = 251
Score = 71.9 bits (36), Expect = 1e-13
Identities = 113/136 (83%), Gaps = 2/136 (1%)
Strand = Plus / Plus
Query: 4 cacagattgcgtgtattttgcgagacgaattttttgagcctaattagtccgtgattagac 63
||||||||||||||| |||||| |||||| |||| ||| ||||| ||| |||| |||
Sbjct: 53 cacagattgcgtgtaaattgcgacacgaatcttttaagcataattgctccatgatctgac 112
Query: 64 aatgttgtgctacagtaaacatgtgctaatgatgggataattagtctttaataaattcg- 122
||||| ||||||||||||||| ||||||| | | ||||||||| ||||||||||||
Sbjct: 113 aatgtgatgctacagtaaacatttgctaataacgaattaattagtc-ttaataaattcgt 171
Query: 123 ctcacagtttacaggc 138
||| | ||||||||||
Sbjct: 172 ctcgcggtttacaggc 187
>42371_osa-MIR2124b:mirbase
Length = 239
Score = 67.9 bits (34), Expect = 2e-12
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 4 cacagattgcgtgtattttgcgagacgaattttttgagcctaattagtccgtgattagac 63
||||||||||||||| ||||||||| ||| |||| || |||||| || ||||| |||
Sbjct: 54 cacagattgcgtgtaaattgcgagacaaatcttttaagtctaattgcgccatgatttgac 113
Query: 64 aatgttgtgctacagtaaacatgtgctaat 93
||| | |||||||||||||||| |||||||
Sbjct: 114 aatatggtgctacagtaaacatttgctaat 143
>42378_osa-MIR2124i:mirbase
Length = 250
Score = 65.9 bits (33), Expect = 8e-12
Identities = 97/117 (82%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 7 agattgcgtgtattttgcgagacgaattttttgagcctaattagtccgtgattagacaat 66
|||||||||||| ||| || |||||| |||| ||||||||| ||| |||| ||||||
Sbjct: 55 agattgcgtgtaaattgtgaaacgaatcttttaagcctaattgctccatgatctgacaat 114
Query: 67 gttgtgctacagtaaacatgtgctaatgatgggataattagtctttaataaattcgc 123
|| |||||||||||||||| || |||| |||| |||| || | |||||||||||||
Sbjct: 115 gtggtgctacagtaaacatttgttaataatggattaatcaggc-ttaataaattcgc 170
>42373_osa-MIR2124d:mirbase
Length = 250
Score = 63.9 bits (32), Expect = 3e-11
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 4 cacagattgcgtgtattttgcgagacgaattttttgagcctaattagtccgtgattagac 63
|||||| |||||||| |||||||| |||| |||| ||||||||| | ||||| |||
Sbjct: 52 cacagactgcgtgtaaattgcgagaggaatcttttaagcctaattgcgctatgatttgac 111
Query: 64 aatgttgtgctacagtaaacatgtgctaatga 95
||||| ||||||||||||| || |||||||||
Sbjct: 112 aatgtggtgctacagtaaatatttgctaatga 143
>42092_osa-MIR445a:mirbase
Length = 268
Score = 58.0 bits (29), Expect = 2e-09
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 23 gcgagacgaattttttgagcctaattagtccgtgattagacaatgttgtgctacagtaaa 82
||||||||||| ||||||| ||||||| || ||||| |||||||| ||||||||||||
Sbjct: 186 gcgagacgaatcttttgagtctaattacaccatgatttgacaatgtgatgctacagtaaa 127
Query: 83 c 83
|
Sbjct: 126 c 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 22 tgcgagacgaattttttgagcctaatta 49
||||||||||||||||| ||||||||||
Sbjct: 81 tgcgagacgaattttttaagcctaatta 108
>42099_osa-MIR445h:mirbase
Length = 277
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 22 tgcgagacgaattttttgagcctaatta 49
||||||||||||||||| ||||||||||
Sbjct: 94 tgcgagacgaattttttaagcctaatta 121
>42098_osa-MIR445g:mirbase
Length = 275
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 22 tgcgagacgaattttttgagcctaatta 49
||||||||||||||||| ||||||||||
Sbjct: 93 tgcgagacgaattttttaagcctaatta 120
>42096_osa-MIR445e:mirbase
Length = 265
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 22 tgcgagacgaattttttgagcctaatta 49
||||||||||||||||| ||||||||||
Sbjct: 88 tgcgagacgaattttttaagcctaatta 115
>42094_osa-MIR445c:mirbase
Length = 260
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 22 tgcgagacgaattttttgagcctaatta 49
||||||||||||||||| ||||||||||
Sbjct: 86 tgcgagacgaattttttaagcctaatta 113
>42377_osa-MIR2124h:mirbase
Length = 275
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 acaatgttgtgctacagtaaacatgtgctaa 92
||||||| |||||||||||||||| ||||||
Sbjct: 132 acaatgtggtgctacagtaaacatatgctaa 162
>42372_osa-MIR2124c:mirbase
Length = 248
Score = 46.1 bits (23), Expect = 7e-06
Identities = 96/119 (80%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 4 cacagattgcgtgtattttgcgagacgaattttttgagcctaattagtccgtgattagac 63
||||| || |||||| ||||||||| ||| |||| || |||||| || ||||| |||
Sbjct: 50 cacagtttacgtgtaaattgcgagacaaatcttttaagtctaattgcgccatgatttgac 109
Query: 64 aatgttgtgctacagtaaacatgtgctaatgatgggataattagtctttaataaattcg 122
|| || ||| ||||||||| || |||||||||| | ||||||| ||| ||||||||||
Sbjct: 110 aacgtggtggtacagtaaatatttgctaatgatagattaattaggctt-aataaattcg 167
>42097_osa-MIR445f:mirbase
Length = 305
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 tgcgagacgaattttttgagcctaatta 49
|||| |||||||||||| ||||||||||
Sbjct: 109 tgcgggacgaattttttaagcctaatta 136
>42093_osa-MIR445b:mirbase
Length = 264
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 tgcgagacgaattttttgagcctaatta 49
||||||||||| ||||| ||||||||||
Sbjct: 87 tgcgagacgaactttttaagcctaatta 114
