miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00700;mir-375;BAAF04058576.1/818-750 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgttgcgcagg 86
||||||||||||||||||||||| ||||||
Sbjct: 39 gttttgttcgttcggctcgcgttacgcagg 68
>RF00700;mir-375;CU468956.14/114092-114163 7955:Danio rerio
(zebrafish)
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgttgcgcag 85
||||||||||||||||||||||| |||||
Sbjct: 42 gttttgttcgttcggctcgcgttacgcag 70
>RF00700;mir-375;AAGU02520619.1/1351-1284 9785:Loxodonta africana
(African savanna elephant)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 36 gcgttttgttcgttcggctcgcgt 59
>RF00700;mir-375;AADN02016765.1/7226-7294 9031:Gallus gallus
(chicken)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 cgttttgttcgttcggctcgcgtt 79
||||||||||||||||||||||||
Sbjct: 38 cgttttgttcgttcggctcgcgtt 61
>RF00700;mir-375;ABEP02038283.1/5668-5595 7739:Branchiostoma
floridae (Florida lancelet)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 cgttttgttcgttcggctcgcgtt 79
||||||||||||||||||||||||
Sbjct: 43 cgttttgttcgttcggctcgcgtt 66
>RF00700;mir-375;CU929360.7/11656-11724 7955:Danio rerio
(zebrafish)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtt 79
|||||||||||||||||||||||
Sbjct: 39 gttttgttcgttcggctcgcgtt 61
