miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 36 tactgtgctgtgcaaatccatgcaaaactgactgtggc 73
|||| |||||||||||||||||||||||||||||||||
Sbjct: 38 tactctgctgtgcaaatccatgcaaaactgactgtggc 75
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaaactgactgtgg 72
||||||||||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactgactgtgg 73
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 63.9 bits (32), Expect = 2e-10
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 7 gtcagtttagctggtttgcat-cagctg-gctactgtgctgtgcaaatccatgcaaaact 64
|||||||| |||||||||||| ||||| | | |||||||||||||||||||||||||||
Sbjct: 5 gtcagttttgctggtttgcattcagctttgttgctgtgctgtgcaaatccatgcaaaact 64
Query: 65 gact 68
||||
Sbjct: 65 gact 68
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtg 71
||||||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgactgtg 78
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaaactgactgtgg 72
|||||||||||||||||||||||||| |||||
Sbjct: 40 tgctgtgcaaatccatgcaaaactgaatgtgg 71
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtggc 73
||||||||||||||||||||||||| ||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgattgtggc 76
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtgg 72
||||||||||||||||||||||||| |||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtgg 79
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 7 gtcagtttagctggtttgcatc-agctg-gctactgtgctgtgcaaatccatgcaaaact 64
|||||||| ||||||||||||| |||| | ||| | |||||||||||||||||||||||
Sbjct: 5 gtcagttttgctggtttgcatccagctttgttaccgcgctgtgcaaatccatgcaaaact 64
Query: 65 gac 67
|||
Sbjct: 65 gac 67
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaaactgac 67
|||||||||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaaactgac 70
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 44 tgtgcaaatccatgcaaaactgactgtggc 73
|||||||||| |||||||||||||||||||
Sbjct: 34 tgtgcaaatctatgcaaaactgactgtggc 63
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaaactga 66
||||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtg 71
||||||||||||||||||||||||| ||||
Sbjct: 46 gctgtgcaaatccatgcaaaactgattgtg 75
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgac 67
||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgac 74
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtg 71
||||||||||||||||||||||||| ||||
Sbjct: 48 gctgtgcaaatccatgcaaaactgattgtg 77
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtg 71
||||||||||||||||||||||||| ||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtg 78
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtg 71
||||||||||||||||||||||||| ||||
Sbjct: 51 gctgtgcaaatccatgcaaaactgattgtg 80
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtg 71
||||||||||||||||||||||||| ||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtg 78
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgac 67
||||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgac 68
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtg 71
||||||||||||||||||||||||| ||||
Sbjct: 47 gctgtgcaaatccatgcaaaactgattgtg 76
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaaactga 66
||||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactga 67
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaaactga 66
||||||||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaaactga 69
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaaactga 66
||||||||||||||||||||||||||
Sbjct: 43 tgctgtgcaaatccatgcaaaactga 68
>RF00245;mir-19;ABRR01417027.1/645-719 30538:Lama pacos (alpaca)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaaactgactgtgg 72
||||||||||||||| |||| |||||||||||
Sbjct: 43 tgctgtgcaaatccaggcaacactgactgtgg 74
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaaact 64
||||||||||||||||||||||||
Sbjct: 43 tgctgtgcaaatccatgcaaaact 66
>RF00245;mir-19;BAAE01249018.1/744-824 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgactgtggc 73
|||||||||| |||||||||||||||| ||||
Sbjct: 50 gctgtgcaaacccatgcaaaactgactatggc 81
>RF00245;mir-19;AAVX01075480.1/1651-1574 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 ctgtgcaaatccatgcaaaactgactg 69
||||||||||||| |||||||||||||
Sbjct: 48 ctgtgcaaatccacgcaaaactgactg 74
>RF00245;mir-19;ABPJ01018453.1/307-378 35575:Mchenga conophoros
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 44 tgtgcaaatccatgcaaaactgactgtggc 73
|||||||||| ||||||||||||| |||||
Sbjct: 43 tgtgcaaatctatgcaaaactgacggtggc 72
>RF00245;mir-19;ABPK01045950.1/308-388 57307:Labeotropheus
fuelleborni
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 gctgtgcaaatccatgcaaaactgac 67
|||||||||| |||||||||||||||
Sbjct: 50 gctgtgcaaacccatgcaaaactgac 75
>RF00245;mir-19;AANH01005996.1/21250-21325 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaa 61
|||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaa 64
>RF00245;mir-19;BAAF04054686.1/763-838 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tgctgtgcaaatccatgcaaa 61
|||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaa 64
