miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42483_ssp-MIR1128:mirbase
Length = 275
Score = 337 bits (170), Expect = 3e-93
Identities = 203/214 (94%)
Strand = Plus / Minus
Query: 44 aaagattcttaattttgactaaatacaaataaaaacatattaatgcttataatgtgtaat 103
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 218 aaagattcttaactttgactaaatacaaataaaaacatattgatgcttatgatgtgtaat 159
Query: 104 aagtataattagattagttatgaaatatagttttataataaacctaattagagattaaaa 163
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 158 aagtataattggattagttatgaaatatagtttcataataaacctaattagagattaaaa 99
Query: 164 tgtaaataatatcatctataaacttagtcaaatttaaagattctttgactcctcaaaaac 223
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 98 tgtagataatatcatctataaacttggtcaaatttaaagattctttgactcctcggaaat 39
Query: 224 cgagatttacatgctttttgggacggagggagta 257
||||||||||||| ||||||||||||||||||||
Sbjct: 38 cgagatttacatgttttttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-05
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 187 ttagtcaaatttaaagattctttgactcctcaaaaaccgagatttacatgctttttggga 246
||||||||| |||| || ||||||||||||| || |||| |||||| ||||||||||
Sbjct: 197 ttagtcaaagttaa-gaatctttgactcctcgggaagcgagggttacattctttttggga 255
Query: 247 cggagggagta 257
|||||| ||||
Sbjct: 256 cggaggtagta 266
>42655_tae-MIR1122:mirbase
Length = 295
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 238 tttttgggacggagggagta 257
||||||||||||||||||||
Sbjct: 44 tttttgggacggagggagta 25
>41838_bdi-MIR5169:mirbase
Length = 210
Score = 40.1 bits (20), Expect = 9e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 178 tctataaacttagtcaaatttaaa 201
||||||||||| ||||||||||||
Sbjct: 160 tctataaacttggtcaaatttaaa 183
