miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa Japonica
Group
Length = 246
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 242 atgcatttattttgggacggagggagtac 270
||||| |||||||||||||||||||||||
Sbjct: 29 atgcacttattttgggacggagggagtac 1
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 245 catttattttgggacggagggagta 269
|||||||||||||||||||||||||
Sbjct: 77 catttattttgggacggagggagta 101
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 245 catttattttgggacggagggagta 269
|||||||||||||||||||||||||
Sbjct: 77 catttattttgggacggagggagta 101
>RF00906;MIR1122;AP008212.1/6831401-6831305 39947:Oryza sativa
Japonica Group
Length = 97
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 246 atttattttgggacggagggagtac 270
|||||||||||||||||||||||||
Sbjct: 70 atttattttgggacggagggagtac 94
>RF01058;MIR806;AACV01020112.1/46634-46870 39947:Oryza sativa
Japonica Group
Length = 237
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 247 tttattttgggacggagggagtac 270
||||||||||||||||||||||||
Sbjct: 214 tttattttgggacggagggagtac 237
>RF00906;MIR1122;ABXC01006480.1/93142-93031 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 246 atttattttgggacggagggagta 269
||||||||||||||||||||||||
Sbjct: 28 atttattttgggacggagggagta 5
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 248 ttattttgggacggagggagtaca 271
||||||||||||||||||||||||
Sbjct: 80 ttattttgggacggagggagtaca 103
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 248 ttattttgggacggagggagtaca 271
||||||||||||||||||||||||
Sbjct: 80 ttattttgggacggagggagtaca 103
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 247 tttattttgggacggagggagtac 270
||||||||||||||||||||||||
Sbjct: 87 tttattttgggacggagggagtac 110
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 246 atttattttgggacggagggagta 269
||||||||||||||||||||||||
Sbjct: 28 atttattttgggacggagggagta 5
>RF00906;MIR1122;AACV01001520.1/25871-25960 39947:Oryza sativa
Japonica Group
Length = 90
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagtac 270
|||| |||||||||||||||||||||||
Sbjct: 31 tgcagttattttgggacggagggagtac 4
>RF00906;MIR1122;AAAA02006222.1/38105-37993 39946:Oryza sativa
Indica Group
Length = 113
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 246 atttattttgggacggagggagta 269
||||||||||||||||||||||||
Sbjct: 28 atttattttgggacggagggagta 5
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 218 tgcacttattttgggacggagggagta 244
>RF01058;MIR806;AAAA02014927.1/5775-5532 39946:Oryza sativa Indica
Group
Length = 244
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 28 tgcacttattttgggacggagggagta 2
>RF01058;MIR806;AACV01000175.1/175-418 39947:Oryza sativa Japonica
Group
Length = 244
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 28 tgcacttattttgggacggagggagta 2
>RF01058;MIR806;AAAA02015465.1/824-1069 39946:Oryza sativa Indica
Group
Length = 246
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 219 tgcacttattttgggacggagggagta 245
>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa Japonica
Group
Length = 241
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 214 tgcacttattttgggacggagggagta 240
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 28 tgcacttattttgggacggagggagta 2
>RF01058;MIR806;AP008214.1/5532426-5532666 39947:Oryza sativa
Japonica Group
Length = 241
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 214 tgcacttattttgggacggagggagta 240
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
Group
Length = 243
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 28 tgcacttattttgggacggagggagta 2
>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa Japonica
Group
Length = 245
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 28 tgcacttattttgggacggagggagta 2
>RF01058;MIR806;AAAA02012959.1/2038-1794 39946:Oryza sativa Indica
Group
Length = 245
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 28 tgcacttattttgggacggagggagta 2
>RF01058;MIR806;AACV01005022.1/1990-2230 39947:Oryza sativa Japonica
Group
Length = 241
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 214 tgcacttattttgggacggagggagta 240
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 214 tgcacttattttgggacggagggagta 240
>RF01058;MIR806;AAAA02007955.1/54103-53859 39946:Oryza sativa Indica
Group
Length = 245
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 28 tgcacttattttgggacggagggagta 2
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 248 ttattttgggacggagggagtac 270
|||||||||||||||||||||||
Sbjct: 90 ttattttgggacggagggagtac 112
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 248 ttattttgggacggagggagtac 270
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtac 4
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 248 ttattttgggacggagggagtac 270
|||||||||||||||||||||||
Sbjct: 94 ttattttgggacggagggagtac 116
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 248 ttattttgggacggagggagtac 270
|||||||||||||||||||||||
Sbjct: 90 ttattttgggacggagggagtac 112
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 248 ttattttgggacggagggagtac 270
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtac 4
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 248 ttattttgggacggagggagtac 270
|||||||||||||||||||||||
Sbjct: 80 ttattttgggacggagggagtac 102
>RF00906;MIR1122;AAAA02031077.1/11612-11490 39946:Oryza sativa
Indica Group
Length = 123
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 247 tttattttgggacggagggagtacact 273
|||||||||||||| ||||||||||||
Sbjct: 97 tttattttgggacgaagggagtacact 123
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa Indica
Group
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 247 tttattttgggacggagggagta 269
|||||||||||||||||||||||
Sbjct: 27 tttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 247 tttattttgggacggagggagta 269
|||||||||||||||||||||||
Sbjct: 110 tttattttgggacggagggagta 132
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 248 ttattttgggacggagggagtac 270
|||||||||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtac 4
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 247 tttattttgggacggagggagta 269
|||||||||||||||||||||||
Sbjct: 96 tttattttgggacggagggagta 118
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagta 269
|||| ||||||||||||||||||||||
Sbjct: 31 tgcacttattttgggacggagggagta 5
>RF00906;MIR1122;AACV01022727.1/29353-29231 39947:Oryza sativa
Japonica Group
Length = 123
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 247 tttattttgggacggagggagtacact 273
|||||||||||||| ||||||||||||
Sbjct: 97 tttattttgggacgaagggagtacact 123
>RF00906;MIR1122;AACV01021306.1/37655-37776 39947:Oryza sativa
Japonica Group
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 249 tattttgggacggagggagtaca 271
|||||||||||||||||||||||
Sbjct: 98 tattttgggacggagggagtaca 120
>RF00906;MIR1122;AP008218.1/11741623-11741744 39947:Oryza sativa
Japonica Group
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 249 tattttgggacggagggagtaca 271
|||||||||||||||||||||||
Sbjct: 98 tattttgggacggagggagtaca 120
>RF00906;MIR1122;AAAA02006215.1/494-605 39946:Oryza sativa Indica
Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 249 tattttgggacggagggagtaca 271
|||||||||||||||||||||||
Sbjct: 88 tattttgggacggagggagtaca 110
>RF00906;MIR1122;AAAA02012151.1/19064-18908 39946:Oryza sativa
Indica Group
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 249 tattttgggacggagggagtaca 271
|||||||||||||||||||||||
Sbjct: 133 tattttgggacggagggagtaca 155
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 247 tttattttgggacggagggagta 269
|||||||||||||||||||||||
Sbjct: 27 tttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 247 tttattttgggacggagggagta 269
|||||||||||||||||||||||
Sbjct: 77 tttattttgggacggagggagta 99
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa Japonica
Group
Length = 97
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 248 ttattttgggacggagggagtac 270
|||||||||||||||||||||||
Sbjct: 72 ttattttgggacggagggagtac 94
>RF00906;MIR1122;AAAA02034673.1/6609-6720 39946:Oryza sativa Indica
Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 249 tattttgggacggagggagtaca 271
|||||||||||||||||||||||
Sbjct: 88 tattttgggacggagggagtaca 110
>RF00906;MIR1122;AC229754.2/94242-94126 63629:Oryza minuta
Length = 117
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 247 tttattttgggacggagggagta 269
|||||||||||||||||||||||
Sbjct: 91 tttattttgggacggagggagta 113
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 247 tttattttgggacggagggagta 269
|||||||||||||||||||||||
Sbjct: 27 tttattttgggacggagggagta 5
>RF00906;MIR1122;AL935069.5/103851-103727 4530:Oryza sativa (rice)
Length = 125
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 243 tgcatttattttgggacggagggagta 269
||||||||| |||||||||||||||||
Sbjct: 31 tgcatttatattgggacggagggagta 5
>RF00906;MIR1122;AAAA02011966.1/4807-4962 39946:Oryza sativa Indica
Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 249 tattttgggacggagggagtaca 271
|||||||||||||||||||||||
Sbjct: 132 tattttgggacggagggagtaca 154
>RF00906;MIR1122;AP008209.1/27314174-27314047 39947:Oryza sativa
Japonica Group
Length = 128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 249 tattttgggacggagggagtaca 271
|||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggagtaca 3
>RF00906;MIR1122;AACV01003177.1/25234-25117 39947:Oryza sativa
Japonica Group
Length = 118
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 249 tattttgggacggagggagtaca 271
|||||||||||||||||||||||
Sbjct: 25 tattttgggacggagggagtaca 3
>RF00906;MIR1122;AACV01003040.1/15315-15426 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 249 tattttgggacggagggagtaca 271
|||||||||||||||||||||||
Sbjct: 88 tattttgggacggagggagtaca 110
>RF00906;MIR1122;AAAA02018626.1/12551-12423 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 247 tttattttgggacggagggagta 269
|||||||||||||||||||||||
Sbjct: 103 tttattttgggacggagggagta 125
