miRNEST 2.0, an integrative microRNA resource :: BLAST
>25654_xla-mir-1b:mirbase
Length = 59
Score = 101 bits (51), Expect = 5e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 4 catacttctttatatgcccatactgaatgaaaatgctatggaatgttaagaagtatgta 62
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 catacttctttatatgcccatactgaatgccaatgctatggaatgttaagaagtatgta 59
>25685_xtr-mir-1a-2:mirbase
Length = 71
Score = 58.0 bits (29), Expect = 7e-10
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccatactgaa-tgaaaatgctatggaatgttaagaagtatgt 61
||||||||||||||||| ||||| ||| || ||||||||||||||| |||||||||||
Sbjct: 7 acatacttctttatatgtccatatggaagtgccaatgctatggaatgtaaagaagtatgt 66
Query: 62 a 62
|
Sbjct: 67 a 67
>38847_lgi-mir-1:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 49 aatgctatggaatgtaaagaagtatgta 76
>25684_xtr-mir-1a-1:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 46 aatgctatggaatgtaaagaagtatgta 73
>25880_gga-mir-1a-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 46 aatgctatggaatgtaaagaagtatgta 73
>26389_tgu-mir-1-2:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 34 aatgctatggaatgtaaagaagtatgta 61
>26614_cfa-mir-1-2:mirbase
Length = 59
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 32 aatgctatggaatgtaaagaagtatgta 59
>26936_eca-mir-1:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 43 aatgctatggaatgtaaagaagtatgta 70
>27327_mdo-mir-1:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 46 aatgctatggaatgtaaagaagtatgta 73
>28351_hsa-mir-1-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 46 aatgctatggaatgtaaagaagtatgta 73
>30036_ppa-mir-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 46 aatgctatggaatgtaaagaagtatgta 73
>30138_ptr-mir-1-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 46 aatgctatggaatgtaaagaagtatgta 73
>31763_mmu-mir-1a-1:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 cacatacttctttatatgcccata 25
||||||||||||||||||||||||
Sbjct: 9 cacatacttctttatatgcccata 32
>33120_bta-mir-1-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||||||||
Sbjct: 46 aatgctatggaatgtaaagaagtatgta 73
>25879_gga-mir-1a-1:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||||||||||||
Sbjct: 7 acatacttctttatatgcccata 29
>25881_gga-mir-1b:mirbase
Length = 64
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgta 62
|||||||||||||||||||||||
Sbjct: 40 tatggaatgttaagaagtatgta 62
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
||||||||||| |||||||||||
Sbjct: 1 acatacttcttcatatgcccata 23
>26388_tgu-mir-1-1:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||||||||||||
Sbjct: 2 acatacttctttatatgcccata 24
>26937_eca-mir-1-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccata 32
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 45 gctatggaatgtaaagaagtatgta 69
>27640_mml-mir-1-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccata 32
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 45 gctatggaatgtaaagaagtatgta 69
>28350_hsa-mir-1-1:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||||||||||||
Sbjct: 7 acatacttctttatatgcccata 29
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 42 gctatggaatgtaaagaagtatgta 66
>30137_ptr-mir-1-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||||||||||||
Sbjct: 6 acatacttctttatatgcccata 28
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 41 gctatggaatgtaaagaagtatgta 65
>30742_ppy-mir-1-1:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||||||||||||
Sbjct: 7 acatacttctttatatgcccata 29
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 42 gctatggaatgtaaagaagtatgta 66
>34184_dre-mir-1-1:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||||||||||||
Sbjct: 23 acatacttctttatatgcccata 45
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 58 gctatggaatgtaaagaagtatgta 82
>34185_dre-mir-1-2:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 3e-06
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccatactgaa--tgaaaatgctatggaatgttaagaagtatg 60
|||||||||||||| |||||||| |||| | ||| |||||||||||| ||||||||||
Sbjct: 14 acatacttctttatgtgcccata-tgaacatataaaagctatggaatgtaaagaagtatg 72
Query: 61 ta 62
||
Sbjct: 73 ta 74
>26613_cfa-mir-1-1:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 catacttctttatatgcccata 25
||||||||||||||||||||||
Sbjct: 1 catacttctttatatgcccata 22
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 35 gctatggaatgtaaagaagtatgta 59
>31416_oan-mir-1a:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 33 aaaatgctatggaatgttaagaagtatgta 62
|||| |||||||||||| ||||||||||||
Sbjct: 53 aaaaagctatggaatgtaaagaagtatgta 82
>31764_mmu-mir-1a-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 tgctatggaatgttaagaagtatgta 62
||||||||||||| ||||||||||||
Sbjct: 42 tgctatggaatgtaaagaagtatgta 67
>31765_mmu-mir-1b:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tgctatggaatgttaagaagtatgta 62
||||||||||||| ||||||||||||
Sbjct: 66 tgctatggaatgtaaagaagtatgta 41
>31766_mmu-mir-1b:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tgctatggaatgttaagaagtatgta 62
||||||||||||| ||||||||||||
Sbjct: 66 tgctatggaatgtaaagaagtatgta 41
>25417_pma-mir-1c:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 53 gctatggaatgtaaagaagtatgta 77
>27641_mml-mir-1-2:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 42 gctatggaatgtaaagaagtatgta 66
>33119_bta-mir-1-1:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 45 gctatggaatgtaaagaagtatgta 69
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||| ||||||||
Sbjct: 10 acatacttctttatgtgcccata 32
>33905_ssc-mir-1:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gctatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 60 gctatggaatgtaaagaagtatgta 84
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3 acatacttctttatatgcccata 25
|||||||||||||| ||||||||
Sbjct: 25 acatacttctttatgtgcccata 47
>32648_rno-mir-1:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||| ||||
Sbjct: 47 aatgctatggaatgtaaagaagtgtgta 74
>33064_rno-mir-3571:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 35 aatgctatggaatgttaagaagtatgta 62
||||||||||||||| ||||||| ||||
Sbjct: 52 aatgctatggaatgtaaagaagtgtgta 25
>34535_fru-mir-1:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 ctatggaatgttaagaagtatgta 62
||||||||||| ||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatgta 69
>34683_tni-mir-1:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 ctatggaatgttaagaagtatgta 62
||||||||||| ||||||||||||
Sbjct: 54 ctatggaatgtaaagaagtatgta 77
>34806_spu-mir-1:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 ctatggaatgttaagaagtatgta 62
||||||||||| ||||||||||||
Sbjct: 57 ctatggaatgtaaagaagtatgta 80
>38719_cte-mir-1:mirbase
Length = 94
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgta 62
|||||||||| ||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79
>38595_ppc-mir-1:mirbase
Length = 104
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgta 62
|||||||||| ||||||||||||
Sbjct: 65 tatggaatgtaaagaagtatgta 87
>38486_crm-mir-1:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgta 62
|||||||||| ||||||||||||
Sbjct: 53 tatggaatgtaaagaagtatgta 75
>24644_bfl-mir-1:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgta 62
|||||||||| ||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatgta 76
>31417_oan-mir-1b:mirbase
Length = 62
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 39 ctatggaatgttaagaagt 57
|||||||||||||||||||
Sbjct: 38 ctatggaatgttaagaagt 56
>38126_cbr-mir-1:mirbase
Length = 94
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgta 62
|||||||||| ||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatgta 76
>38266_cel-mir-1:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgta 62
|||||||||| ||||||||||||
Sbjct: 59 tatggaatgtaaagaagtatgta 81
