miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 ctcttgtgcctactgaactgatatcagttctatttcacacactggctcagttcagcagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttgtgcctactgaactgatatcagttctatttcacacactggctcagttcagcagga 60
Query: 61 acaggag 67
|||||||
Sbjct: 61 acaggag 67
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 71 gtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaacag 12
Query: 65 gag 67
|||
Sbjct: 11 gag 9
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 71 gtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaacag 12
Query: 65 gag 67
|||
Sbjct: 11 gag 9
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>33024_rno-mir-3074:mirbase
Length = 117
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 84 gtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaacag 25
Query: 65 gag 67
|||
Sbjct: 24 gag 22
>26413_tgu-mir-24:mirbase
Length = 132
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 63 gtgcctactgagctgatatcagttctgattttacacactggctcagttcagcaggaacag 122
Query: 65 gag 67
|||
Sbjct: 123 gag 125
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 69 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 10
Query: 65 gag 67
|||
Sbjct: 9 gag 7
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 69 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 10
Query: 65 gag 67
|||
Sbjct: 9 gag 7
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 5 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 64
Query: 65 gag 67
|||
Sbjct: 65 gag 67
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 93.7 bits (47), Expect = 1e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 14 gtgcctactgagctgatatcagttctcattttacacactggctcagttcagcaggaacag 73
Query: 65 gag 67
|||
Sbjct: 74 gag 76
>25908_gga-mir-24:mirbase
Length = 68
Score = 85.7 bits (43), Expect = 3e-18
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgatatcagttctgattttacatactggctcagttcagcaggaacag 65
Query: 65 gag 67
|||
Sbjct: 66 gag 68
>31442_oan-mir-24:mirbase
Length = 84
Score = 83.8 bits (42), Expect = 1e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttctatttcacacactggctcagttcagcaggaacagg 65
||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 15 gtgcctactgagctgatatcagttctcgttgacccactggctcagttcagcaggaacagg 74
Query: 66 ag 67
||
Sbjct: 75 ag 76
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 81.8 bits (41), Expect = 5e-17
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 2 gtgcctactgagctgatatcagttctcattgtacacactggctcagttcagcaggaacag 61
Query: 65 g 65
|
Sbjct: 62 g 62
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 71.9 bits (36), Expect = 5e-14
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcagga 60
||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct: 2 gtgcctactgagctgataacagttctgattttacacactggctcagttcagcagga 57
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 38 cacactggctcagttcagcaggaacagga 66
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 38 cacactggctcagttcagcaggaacagga 66
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 acactggctcagttcagcaggaacaggag 67
|||||||||||||||||||||||||||||
Sbjct: 76 acactggctcagttcagcaggaacaggag 104
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 cactggctcagttcagcaggaacaggag 67
||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggag 85
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 40 cactggctcagttcagcaggaacaggag 67
||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggag 9
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 40 cactggctcagttcagcaggaacaggag 67
||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggag 9
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 cactggctcagttcagcaggaacaggag 67
||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggag 85
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 cacactggctcagttcagcaggaacagg 65
||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagg 72
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 cactggctcagttcagcaggaacaggag 67
||||||||||||||||||||||||||||
Sbjct: 46 cactggctcagttcagcaggaacaggag 73
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 cactggctcagttcagcaggaacaggag 67
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 actggctcagttcagcaggaacaggag 67
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 actggctcagttcagcaggaacaggag 67
|||||||||||||||||||||||||||
Sbjct: 44 actggctcagttcagcaggaacaggag 70
>28270_ggo-mir-24:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 acactggctcagttcagcaggaacagg 65
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 acactggctcagttcagcaggaacagg 65
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 acactggctcagttcagcaggaacagg 65
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 acactggctcagttcagcaggaacagg 65
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 acactggctcagttcagcaggaacagg 65
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 actggctcagttcagcaggaacaggag 67
|||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggag 78
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 actggctcagttcagcaggaacaggag 67
|||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggag 78
>25444_pma-mir-24:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 cactggctcagttcagcaggaacag 64
|||||||||||||||||||||||||
Sbjct: 55 cactggctcagttcagcaggaacag 79
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 actggctcagttcagcaggaacagg 65
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 actggctcagttcagcaggaacagg 65
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 actggctcagttcagcaggaacagg 65
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 ctggctcagttcagcaggaacagg 65
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 ctggctcagttcagcaggaacagg 65
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 ctggctcagttcagcaggaacagg 65
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 ctggctcagttcagcagga 60
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 ctggctcagttcagcagga 60
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
