miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26458_tgu-mir-129:mirbase
Length = 83
Score = 111 bits (56), Expect = 9e-26
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct: 8 aatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttacccca 67
Query: 71 aaaagcatttgcggag 86
||||||||| ||||||
Sbjct: 68 aaaagcattcgcggag 83
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 12 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 70
Query: 71 aaaagcatttgcggagggcg 90
||||||||||||||||||||
Sbjct: 71 aaaagcatttgcggagggcg 90
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 12 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 70
Query: 71 aaaagcatttgcggagggcg 90
||||||||||||||||||||
Sbjct: 71 aaaagcatttgcggagggcg 90
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 11 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 69
Query: 71 aaaagcatttgcggagggcg 90
||||||||||||||||||||
Sbjct: 70 aaaagcatttgcggagggcg 89
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 95.6 bits (48), Expect = 5e-21
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 12 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 70
Query: 71 aaaagcatttgcggagggcg 90
||||||||||||||||||||
Sbjct: 71 aaaagcatttgcggagggcg 90
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 13 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 71
Query: 71 aaaagcatttgcggagggcg 90
||||||||| ||||||||||
Sbjct: 72 aaaagcattcgcggagggcg 91
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 12 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 70
Query: 71 aaaagcatttgcggagggcg 90
||||||||| ||||||||||
Sbjct: 71 aaaagcattcgcggagggcg 90
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 12 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 70
Query: 71 aaaagcatttgcggagggcg 90
||||||||| ||||||||||
Sbjct: 71 aaaagcattcgcggagggcg 90
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 16 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 74
Query: 71 aaaagcatttgcggagggcg 90
||||||||| ||||||||||
Sbjct: 75 aaaagcattcgcggagggcg 94
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 13 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 71
Query: 71 aaaagcatttgcggagggcg 90
||||||||| ||||||||||
Sbjct: 72 aaaagcattcgcggagggcg 91
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 13 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 71
Query: 71 aaaagcatttgcggagggcg 90
||||||||| ||||||||||
Sbjct: 72 aaaagcattcgcggagggcg 91
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 5e-15
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 8 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 66
Query: 71 aaaagcatttgcgg 84
||||||||| ||||
Sbjct: 67 aaaagcattcgcgg 80
>27020_eca-mir-129b:mirbase
Length = 74
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 4 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 62
Query: 71 aaaagcatt 79
|||||||||
Sbjct: 63 aaaagcatt 71
>27021_eca-mir-129b:mirbase
Length = 74
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttacccca 70
|||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||
Sbjct: 4 aatctttttgcggtctgggcttgctgtacataactcaatagcc-ggaagcccttacccca 62
Query: 71 aaaagcatt 79
|||||||||
Sbjct: 63 aaaagcatt 71
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 54 gggaagcccttaccccaaaaagcatttgcggagggc 89
||||||||||||||||||||||||||||||||||||
Sbjct: 52 gggaagcccttaccccaaaaagcatttgcggagggc 87
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 69.9 bits (35), Expect = 3e-13
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 1 gtccttctcaaatctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagc 60
||||||| | ||||||||||||||||||||||||||| | | | | | |||||||
Sbjct: 1 gtccttcacgaatctttttgcggtctgggcttgctgttctttactggtaatctgggaagc 60
Query: 61 ccttaccccaaaaagcatttgcggagg 87
|||||||||||||||||||||||||||
Sbjct: 61 ccttaccccaaaaagcatttgcggagg 87
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 63.9 bits (32), Expect = 2e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 14 ctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttaccccaaaa 73
||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgtacataactcgatagcc-ggaagcccttaccccaaaa 59
Query: 74 agca 77
||||
Sbjct: 60 agca 63
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaagcatttgcggagggc 89
|||||||||||||||||||||||||||||| ||||
Sbjct: 51 ggaagcccttaccccaaaaagcatttgcggggggc 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 gtccttctcaaatctttttgcggtctgggcttgctgt 37
||||||| | |||||||||||||||||||||||||||
Sbjct: 1 gtccttcacgaatctttttgcggtctgggcttgctgt 37
>25478_pma-mir-129a:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/71 (85%), Gaps = 7/71 (9%)
Strand = Plus / Plus
Query: 11 aatctttttgcggtctgggcttgctgt--atgtaaatacctagccgggaagcccttaccc 68
|||||||||||||| |||||||||||| || ||| ||||||| ||||||||||||
Sbjct: 12 aatctttttgcggtttgggcttgctgttcatctaa-----tagccggcaagcccttaccc 66
Query: 69 caaaaagcatt 79
|||||||||||
Sbjct: 67 caaaaagcatt 77
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tctcaaatctttttgcggtctgggcttgctgt 37
||||||| ||||||||||||||||||||||||
Sbjct: 1 tctcaaagctttttgcggtctgggcttgctgt 32
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttaccccaaa 72
||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 64
Query: 73 aag 75
|||
Sbjct: 65 aag 67
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgtatgtaaatacctagccgggaagcccttaccccaaa 72
||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccccaaa 63
Query: 73 aag 75
|||
Sbjct: 64 aag 66
>27018_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 48 ggaagcccttaccccaaaaag 68
>27019_eca-mir-129a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 48 ggaagcccttaccccaaaaag 68
>27379_mdo-mir-129:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
>27725_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>27726_mml-mir-129:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 2 atctttttgcggtctgggcttgctgt 27
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 46 ggaagcccttaccccaaaaag 66
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>31484_oan-mir-129:mirbase
Length = 128
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 28 atctttttgcggtctgggcttgctgt 53
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 72 ggaagcccttaccccaaaaag 92
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgt 28
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgt 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaagcatttgcgg 84
||||||||||||||||||||| || |||||
Sbjct: 53 ggaagcccttaccccaaaaagtatctgcgg 82
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgt 29
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgt 37
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 49 tagccgggaagcccttaccccaaaaag 75
||||| |||||||||||||||||||||
Sbjct: 50 tagccaggaagcccttaccccaaaaag 76
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ggaagcccttaccccaaaaag 75
|||||||||||||||||||||
Sbjct: 43 ggaagcccttaccccaaaaag 63
