miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 61.9 bits (31), Expect = 6e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaaagtatccaggaagcccttatcccaaa 68
|||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||
Sbjct: 6 ctttttgcggtctgggcttgctgttctc-tccacagtagtcaggaagcccttaccccaaa 64
Query: 69 aag 71
|||
Sbjct: 65 aag 67
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaa 38
||||||||||||||||||||||||||||||
Sbjct: 14 ctttttgcggtctgggcttgctgttctcaa 43
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 1e-09
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatc-aaagtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||||| || | |||| ||||||||||||| |||||
Sbjct: 6 ctttttgcggtctgggcttgctgttctc--tcgacagtagtcaggaagcccttaccccaa 63
Query: 68 aaag 71
||||
Sbjct: 64 aaag 67
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 1e-09
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatc-aaagtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||||| || | |||| ||||||||||||| |||||
Sbjct: 6 ctttttgcggtctgggcttgctgttctc--tcgacagtagtcaggaagcccttaccccaa 63
Query: 68 aaag 71
||||
Sbjct: 64 aaag 67
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tctcaaagctttttgcggtctgggcttgctgt 32
||||||| ||||||||||||||||||||||||
Sbjct: 6 tctcaaatctttttgcggtctgggcttgctgt 37
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 1 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 59
Query: 68 aaag 71
||||
Sbjct: 60 aaag 63
>27018_eca-mir-129a:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 6 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 64
Query: 68 aaag 71
||||
Sbjct: 65 aaag 68
>27019_eca-mir-129a:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 6 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 64
Query: 68 aaag 71
||||
Sbjct: 65 aaag 68
>27725_mml-mir-129:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 5 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 63
Query: 68 aaag 71
||||
Sbjct: 64 aaag 67
>27726_mml-mir-129:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 5 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 63
Query: 68 aaag 71
||||
Sbjct: 64 aaag 67
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 5 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 63
Query: 68 aaag 71
||||
Sbjct: 64 aaag 67
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 4 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 62
Query: 68 aaag 71
||||
Sbjct: 63 aaag 66
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 5 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 63
Query: 68 aaag 71
||||
Sbjct: 64 aaag 67
>31484_oan-mir-129:mirbase
Length = 128
Score = 56.0 bits (28), Expect = 4e-09
Identities = 66/75 (88%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgtt-ctc-aatcaaagtatccaggaagcccttatccca 66
||||||||||||||||||||||||| ||| |||| |||| ||||||||||||| ||||
Sbjct: 30 ctttttgcggtctgggcttgctgttcctctaatc--agtagtcaggaagcccttacccca 87
Query: 67 aaaagaatttgcgag 81
||||| || ||||||
Sbjct: 88 aaaagtatctgcgag 102
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctc 36
||||||||||||||||||||||||||||
Sbjct: 14 ctttttgcggtctgggcttgctgttctc 41
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 51 ggaagcccttatcccaaaaagaatttgcg 79
||||||||||| ||||||||| |||||||
Sbjct: 51 ggaagcccttaccccaaaaagcatttgcg 79
>27379_mdo-mir-129:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc--tcaatcaaagtatccaggaagcccttatccca 66
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| ||||
Sbjct: 6 ctttttgcggtctgggcttgctgttccttaaatc--agtagtcaggaagcccttacccca 63
Query: 67 aaaag 71
|||||
Sbjct: 64 aaaag 68
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc--tcaatcaaagtatccaggaagcccttatccca 66
|||||||||||||||||||||||||| | || | |||| |||||||||||||| ||||
Sbjct: 14 ctttttgcggtctgggcttgctgttccttgaacc--agtagccaggaagcccttacccca 71
Query: 67 aaaag 71
|||||
Sbjct: 72 aaaag 76
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttct 35
|||||||||||||||||||||||||||
Sbjct: 14 ctttttgcggtctgggcttgctgttct 40
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 51 ggaagcccttatcccaaaaagaatttgcg 79
||||||||||| ||||||||| |||||||
Sbjct: 55 ggaagcccttaccccaaaaagcatttgcg 83
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaaagtatccaggaagcccttatcccaaa 68
|||||||||||||||||||||||||| | | |||| |||||||||||||| ||||||
Sbjct: 6 ctttttgcggtctgggcttgctgttc-ctaaggcagtagccaggaagcccttaccccaaa 64
Query: 69 aag 71
|||
Sbjct: 65 aag 67
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaaagtatccaggaagcccttatcccaaa 68
|||||||||||||||||||||||||| | | |||| |||||||||||||| ||||||
Sbjct: 5 ctttttgcggtctgggcttgctgttc-ctaaggcagtagccaggaagcccttaccccaaa 63
Query: 69 aag 71
|||
Sbjct: 64 aag 66
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc 34
||||||||||||||||||||||||||
Sbjct: 5 ctttttgcggtctgggcttgctgttc 30
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc 34
||||||||||||||||||||||||||
Sbjct: 11 ctttttgcggtctgggcttgctgttc 36
>26458_tgu-mir-129:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 11 ctttttgcggtctgggcttgctgt 34
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
>27020_eca-mir-129b:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 7 ctttttgcggtctgggcttgctgt 30
>27021_eca-mir-129b:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 7 ctttttgcggtctgggcttgctgt 30
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 16 ctttttgcggtctgggcttgctgt 39
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 51 ggaagcccttatcccaaaaagaatttgcg 79
||||||||||| ||||||||| |||||||
Sbjct: 55 ggaagcccttaccccaaaaagcatttgcg 83
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 51 ggaagcccttatcccaaaaagaatttgcg 79
||||||||||| ||||||||| |||||||
Sbjct: 55 ggaagcccttaccccaaaaagcatttgcg 83
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 14 ctttttgcggtctgggcttgctgt 37
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 51 ggaagcccttatcccaaaaagaatttgcg 79
||||||||||| ||||||||| |||||||
Sbjct: 54 ggaagcccttaccccaaaaagcatttgcg 82
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 51 ggaagcccttatcccaaaaagaatttgcg 79
||||||||||| ||||||||| |||||||
Sbjct: 55 ggaagcccttaccccaaaaagcatttgcg 83
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 19 ctttttgcggtctgggcttgctgt 42
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 16 ctttttgcggtctgggcttgctgt 39
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 16 ctttttgcggtctgggcttgctgt 39
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 11 ctttttgcggtctgggcttgctgt 34
>25478_pma-mir-129a:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc 34
||||||||||| ||||||||||||||
Sbjct: 15 ctttttgcggtttgggcttgctgttc 40
