miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00486;mir-129;BAAE01197820.1/2737-2827 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaaagtatccaggaagcccttatcccaaa 68
|||||||||||||||||||||||||| | | ||||| |||||||||||||| ||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttc-ctaaggaagtagccaggaagcccttaccccaaa 73
Query: 69 aag 71
|||
Sbjct: 74 aag 76
>RF00486;mir-129;CR376774.9/14862-14774 7955:Danio rerio
(zebrafish)
Length = 89
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaa 38
||||||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttctcaa 44
>RF00486;mir-129;AAPY01581361.1/1091-1178 37347:Tupaia belangeri
(northern tree shrew)
Length = 88
Score = 56.0 bits (28), Expect = 7e-08
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 76 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 18
Query: 68 aaag 71
||||
Sbjct: 17 aaag 14
>RF00486;mir-129;AAGU02960740.1/758-849 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaa-agtatccaggaagcccttatcccaa 67
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct: 15 ctttttgcggtctgggcttgctgttc-ctctcaacagtagtcaggaagcccttaccccaa 73
Query: 68 aaag 71
||||
Sbjct: 74 aaag 77
>RF00486;mir-129;CAAE01017155.1/507-418 99883:Tetraodon
nigroviridis
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctc 36
||||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttctc 42
>RF00486;mir-129;AAFR03031917.1/14139-14048 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/65 (87%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc--tcaatcaaagtatccaggaagcccttatccca 66
|||||||||||||||||||||||||| | |||| |||| ||||||||||||| ||||
Sbjct: 15 ctttttgcggtctgggcttgctgttccttaaatc--agtagtcaggaagcccttacccca 72
Query: 67 aaaag 71
|||||
Sbjct: 73 aaaag 77
>RF00486;mir-129;BX649263.6/91330-91421 7955:Danio rerio
(zebrafish)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/65 (87%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc--tcaatcaaagtatccaggaagcccttatccca 66
|||||||||||||||||||||||||| | || | |||| |||||||||||||| ||||
Sbjct: 15 ctttttgcggtctgggcttgctgttccttgaacc--agtagccaggaagcccttacccca 72
Query: 67 aaaag 71
|||||
Sbjct: 73 aaaag 77
>RF00486;mir-129;AAGW01169874.1/1220-1131 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc 34
||||||||||||||||||||||||||
Sbjct: 13 ctttttgcggtctgggcttgctgttc 38
>RF00486;mir-129;AAWZ01034774.1/20277-20368 28377:Anolis
carolinensis (green anole)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc 34
||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttc 40
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 caggaagcccttatcccaaaaagaatttgcgagg 82
||||||||||||| ||||||||| ||||||||||
Sbjct: 55 caggaagcccttaccccaaaaagtatttgcgagg 88
>RF00486;mir-129;BX927136.11/83051-82960 7955:Danio rerio
(zebrafish)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc 34
||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;CR376745.11/92203-92293 7955:Danio rerio
(zebrafish)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc 34
||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttc 40
>RF00486;mir-129;BAAF04038928.1/6397-6487 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 caaagctttttgcggtctgggcttgctgtt 33
|||| |||||||||||||||||||||||||
Sbjct: 10 caaatctttttgcggtctgggcttgctgtt 39
>RF00486;mir-129;AAVX01173776.1/393-484 7868:Callorhinchus milii
(ghost shark)
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttc 34
||||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgttc 40
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 49 caggaagcccttatcccaaaaagaatttgcgagg 82
||||||||||||| ||||||||| ||||||||||
Sbjct: 55 caggaagcccttaccccaaaaagtatttgcgagg 88
>RF00486;mir-129;BAAF04098976.1/11798-11711 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 50.1 bits (25), Expect = 4e-06
Identities = 55/63 (87%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgttctcaatcaaagtatccaggaagcccttatcccaaa 68
||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||
Sbjct: 15 ctttttgcggtctgggcttgctg---tcaagttaa-tatccaggaagcccttaccccaaa 70
Query: 69 aag 71
|||
Sbjct: 71 aag 73
>RF00486;mir-129;ABQF01002214.1/108-198 59729:Taeniopygia guttata
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;CAAB01002535.1/31821-31735 31033:Takifugu
rubripes
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;AANH01000122.1/1544-1631 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;BAAF04049597.1/1635-1547 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgctgt 32
||||||||||||||||||||||||
Sbjct: 15 ctttttgcggtctgggcttgctgt 38
>RF00486;mir-129;ABRQ01241339.1/77-1 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttttgcggtctgggcttgctgt 32
||||||||||||||||||||||
Sbjct: 16 ttttgcggtctgggcttgctgt 37
>RF00486;mir-129;CAAB01002050.1/381-289 31033:Takifugu rubripes
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ctttttgcggtctgggcttgct 30
||||||||||||||||||||||
Sbjct: 16 ctttttgcggtctgggcttgct 37
>RF00486;mir-129;AANH01001665.1/69968-69881 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 46 atccaggaagcccttatcccaaaaag 71
|||||||||||||||| |||||||||
Sbjct: 48 atccaggaagcccttaccccaaaaag 73
