miRNEST 2.0, an integrative microRNA resource :: BLAST
>25991_gga-mir-200a:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 2 ggtcctctatggacatcttactagacagtgctggatttattttatcttttctaacactgt 61
|||||||| ||| ||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct: 1 ggtcctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgt 60
Query: 62 ctggtaacgatgtttaaagagtga 85
||||||||||||||||||| ||||
Sbjct: 61 ctggtaacgatgtttaaagggtga 84
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 89.7 bits (45), Expect = 3e-19
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1 tggtcctctatggacatcttactagacagtgctggatttattttatcttttctaacactg 60
||||||||| ||| ||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 9 tggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactg 68
Query: 61 tctggtaacgatgtttaaagagtga 85
|||||||||||||||||||| ||||
Sbjct: 69 tctggtaacgatgtttaaagggtga 93
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 5 cctctatggacatcttactagacagtgctggatttattttatcttttctaacactgtctg 64
||||| ||| ||||||||||||||||||||||||| || || | ||||||||||||||
Sbjct: 4 cctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgtctg 62
Query: 65 gtaacgatgtttaaagag 82
||||||||||||||||||
Sbjct: 63 gtaacgatgtttaaagag 80
>31528_oan-mir-200a:mirbase
Length = 114
Score = 63.9 bits (32), Expect = 2e-11
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 1 tggtcctctatggacatcttactagacagtgctggatttattttatcttttctaacactg 60
|||||||| ||| |||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 16 tggtcctccgtgggcatcttactagacagtgctggatt--tgggatctactctaacactg 73
Query: 61 tctggtaacgatgtt 75
|||||||||||||||
Sbjct: 74 tctggtaacgatgtt 88
>34355_dre-mir-200a:mirbase
Length = 86
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 48 ttttctaacactgtctggtaacgatgttt 76
|||||||||||||||||||||||||||||
Sbjct: 47 ttttctaacactgtctggtaacgatgttt 75
>33278_bta-mir-200a:mirbase
Length = 86
Score = 56.0 bits (28), Expect = 4e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 5 cctctatggacatcttactagacagtgctggatttattttatcttttctaacactgtctg 64
||||| |||||||||||| ||||||||||||||| | || ||||||||||||||
Sbjct: 4 cctctgtggacatcttaccggacagtgctggatttctcggctcgactctaacactgtctg 63
Query: 65 gtaacgatgtttaaag 80
||||||||||| ||||
Sbjct: 64 gtaacgatgttcaaag 79
>34628_fru-mir-200a:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 ttctaacactgtctggtaacgatgttt 76
|||||||||||||||||||||||||||
Sbjct: 47 ttctaacactgtctggtaacgatgttt 73
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tctaacactgtctggtaacgatgtttaaag 80
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>27087_eca-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tctaacactgtctggtaacgatgtttaaag 80
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>27798_mml-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tctaacactgtctggtaacgatgtttaaag 80
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tctaacactgtctggtaacgatgtttaaag 80
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tctaacactgtctggtaacgatgtttaaag 80
||||||||||||||||||||||||| ||||
Sbjct: 51 tctaacactgtctggtaacgatgttcaaag 80
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tctaacactgtctggtaacgatgtttaaag 80
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tctaacactgtctggtaacgatgtttaaag 80
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>32788_rno-mir-200a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 tctaacactgtctggtaacgatgtttaaag 80
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>33035_rno-mir-3548:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 51 tctaacactgtctggtaacgatgtttaaag 80
||||||||||||||||||||||||| ||||
Sbjct: 51 tctaacactgtctggtaacgatgttcaaag 22
>34775_tni-mir-200a:mirbase
Length = 62
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 ttctaacactgtctggtaacgatgtt 75
||||||||||||||||||||||||||
Sbjct: 37 ttctaacactgtctggtaacgatgtt 62
>34310_dre-mir-141:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 ttctaacactgtctggtaacgatg 73
||||||||||||||||||||||||
Sbjct: 48 ttctaacactgtctggtaacgatg 71
>25328_csa-mir-141:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 50 ttctaacactgtctggtaacgatg 73
||||||||||||||||||| ||||
Sbjct: 45 ttctaacactgtctggtaaagatg 68
>27389_mdo-mir-141:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 50 ttctaacactgtctggtaacgatg 73
||||||||||||||||||| ||||
Sbjct: 38 ttctaacactgtctggtaaagatg 61
