miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34367_dre-mir-212:mirbase
Length = 94
Score = 71.9 bits (36), Expect = 8e-14
Identities = 68/76 (89%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 17 accttggctctagactgcttactgtgaaactgtg-ctataggaacagtaacagtctacag 75
|||||||||||||||||||||||| ||| |||| || | | |||||||||||||||||
Sbjct: 15 accttggctctagactgcttactgctaaa-tgtgtctgaaagtacagtaacagtctacag 73
Query: 76 tcatggctactgacgt 91
||||||||||||||||
Sbjct: 74 tcatggctactgacgt 89
>34635_fru-mir-212:mirbase
Length = 95
Score = 71.9 bits (36), Expect = 8e-14
Identities = 68/76 (89%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 16 caccttggctctagactgcttactg-tgaaactgtgctataggaacagtaacagtctaca 74
||||||||||||||||||||||||| | |||| | | ||| | ||||||||||||||||
Sbjct: 15 caccttggctctagactgcttactgctaaaaccgctc-ataagtacagtaacagtctaca 73
Query: 75 gtcatggctactgacg 90
||||||||||||||||
Sbjct: 74 gtcatggctactgacg 89
>34783_tni-mir-212:mirbase
Length = 95
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 59 acagtaacagtctacagtcatggctactgacg 90
||||||||||||||||||||||||||||||||
Sbjct: 58 acagtaacagtctacagtcatggctactgacg 89
>27427_mdo-mir-212:mirbase
Length = 91
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 cggcaccttggctctagactgcttactg 40
||||||||||||||||||||||||||||
Sbjct: 12 cggcaccttggctctagactgcttactg 39
>27808_mml-mir-212:mirbase
Length = 110
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 cggcaccttggctctagactgcttactg 40
||||||||||||||||||||||||||||
Sbjct: 27 cggcaccttggctctagactgcttactg 54
>28530_hsa-mir-212:mirbase
Length = 110
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 cggcaccttggctctagactgcttactg 40
||||||||||||||||||||||||||||
Sbjct: 27 cggcaccttggctctagactgcttactg 54
>31939_mmu-mir-212:mirbase
Length = 91
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 cggcaccttggctctagactgcttactg 40
||||||||||||||||||||||||||||
Sbjct: 12 cggcaccttggctctagactgcttactg 39
>31940_mmu-mir-212:mirbase
Length = 91
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 cggcaccttggctctagactgcttactg 40
||||||||||||||||||||||||||||
Sbjct: 12 cggcaccttggctctagactgcttactg 39
>32803_rno-mir-212:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 cggcaccttggctctagactgcttactg 40
||||||||||||||||||||||||||||
Sbjct: 28 cggcaccttggctctagactgcttactg 55
>33289_bta-mir-212:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 cggcaccttggctctagactgcttactg 40
||||||||||||||||||||||||||||
Sbjct: 28 cggcaccttggctctagactgcttactg 55
>26772_cfa-mir-212:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 accttggctctagactgcttactg 40
||||||||||||||||||||||||
Sbjct: 1 accttggctctagactgcttactg 24
>27096_eca-mir-212:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 ccttggctctagactgcttactg 40
|||||||||||||||||||||||
Sbjct: 1 ccttggctctagactgcttactg 23
