miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27428_mdo-mir-214:mirbase
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 105/106 (99%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>26773_cfa-mir-214:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>31534_oan-mir-214:mirbase
Length = 118
Score = 194 bits (98), Expect = 9e-51
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tggctggacggagttgtcacgtgtctgcctgtctacacttgctgtgcagaacatcctctc 66
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 112
>33290_bta-mir-214:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>34039_ssc-mir-214:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27519_age-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27625_sla-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27809_mml-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28236_mne-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28330_ggo-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28531_hsa-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30118_ppa-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30289_ptr-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30907_ppy-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>31941_mmu-mir-214:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 103/106 (97%)
Strand = Plus / Plus
Query: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 tggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
Query: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>32804_rno-mir-214:mirbase
Length = 110
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 12 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 71
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 15 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 74
Query: 72 caggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||
Sbjct: 75 caggcacagacaggcagtcacatgacaacccagcct 110
>33026_rno-mir-3120:mirbase
Length = 117
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Minus
Query: 12 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacag 71
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 107 gagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacag 48
Query: 72 caggcacagacaggcagtcacatgacaacccagcct 107
||||||||||||||||||||||||||||||||||||
Sbjct: 47 caggcacagacaggcagtcacatgacaacccagcct 12
>26509_tgu-mir-214:mirbase
Length = 92
Score = 168 bits (85), Expect = 5e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 11 ggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtaca 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtaca 63
Query: 71 gcaggcacagacaggcagtcacatgacaa 99
|||||||||||||||||||| ||||||||
Sbjct: 64 gcaggcacagacaggcagtcgcatgacaa 92
>29245_hsa-mir-3120:mirbase
Length = 81
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Minus
Query: 17 gtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggc 76
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 77 acagacaggcagtcacatgac 97
|||||||||||||||||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>29246_hsa-mir-3120:mirbase
Length = 81
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Minus
Query: 17 gtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggc 76
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 77 acagacaggcagtcacatgac 97
|||||||||||||||||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>26001_gga-mir-214:mirbase
Length = 110
Score = 137 bits (69), Expect = 2e-33
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 11 ggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtaca 70
|||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||
Sbjct: 14 ggagttgtcatgtgtctgtctgtctacacttgctgtccataacatccactcacctgtaca 73
Query: 71 gcaggcacagacaggcagtcacatgacaacccagcct 107
|| || |||||||||||||||| ||||||||||||||
Sbjct: 74 gcgggaacagacaggcagtcacctgacaacccagcct 110
>27097_eca-mir-214:mirbase
Length = 65
Score = 121 bits (61), Expect = 1e-28
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 25 tctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagacag 84
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
Query: 85 gcagt 89
|||||
Sbjct: 61 gcagt 65
>34368_dre-mir-214:mirbase
Length = 100
Score = 99.6 bits (50), Expect = 4e-22
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 23 tgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagac 82
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 18 tgtctgcctgtctacacttgctgtgcagaacttcct-gcacctgtacagcaggcacagac 76
Query: 83 aggcag 88
||||||
Sbjct: 77 aggcag 82
>34636_fru-mir-214:mirbase
Length = 99
Score = 81.8 bits (41), Expect = 9e-17
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 21 tgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacag 80
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
Query: 81 acaggcag 88
||||||||
Sbjct: 78 acaggcag 85
>34784_tni-mir-214:mirbase
Length = 88
Score = 81.8 bits (41), Expect = 9e-17
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 21 tgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacag 80
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||
Sbjct: 5 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 62
Query: 81 acaggcag 88
||||||||
Sbjct: 63 acaggcag 70
