miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 141 gatgggaatcttgatgatgctgcatcggcaa 171
|||||||||||||||||||||||||||||||
Sbjct: 100 gatgggaatcttgatgatgctgcatcggcaa 130
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 142 atgggaatcttgatgatgctgcatcggcaa 171
||||||||||||||||||||||||||||||
Sbjct: 150 atgggaatcttgatgatgctgcatcggcaa 179
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 141 gatgggaatcttgatgatgctgcatcggcaataa 174
|||| |||||||||||||||||||||||||||||
Sbjct: 78 gatgagaatcttgatgatgctgcatcggcaataa 111
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 142 atgggaatcttgatgatgctgcatcggcaataa 174
||||||||||||||||||||||| |||||||||
Sbjct: 168 atgggaatcttgatgatgctgcagcggcaataa 200
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 28 ctgtttgcgggtgtggcatcatcaagattcacaaaa 63
|||||||||| || |||||||||||||||||||||
Sbjct: 1 ctgtttgcggatggagcatcatcaagattcacaaaa 36
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaataa 174
|||||||||||||||||||||||||||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaataa 140
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 tgtttgcgggtgtggcatcatcaagattcaca 60
|||||||||||| ||||||||||||||||||
Sbjct: 2 tgtttgcgggtggagcatcatcaagattcaca 33
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaataa 174
|||||||||||||||||||||||||||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaataa 161
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 142 atgggaatcttgatgatgctgcatcggcaataa 174
||||||||||||||||||||||| |||||||||
Sbjct: 123 atgggaatcttgatgatgctgcagcggcaataa 155
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 29 tgtttgcgggtgtggcatcatcaagattcacaa 61
|||||||||| ||||||||||||||||||||||
Sbjct: 2 tgtttgcgggcgtggcatcatcaagattcacaa 34
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 143 tgggaatcttgatgatgctgcatcggcaataa 174
|||||||||||||||||||||| |||||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaataa 143
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 29 tgtttgcgggtgtggcatcatcaagattcaca 60
||||||||||||| ||||||||||||||||||
Sbjct: 2 tgtttgcgggtgtagcatcatcaagattcaca 33
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaataa 174
||||||||||||||||||||| |||||||
Sbjct: 130 gaatcttgatgatgctgcatcagcaataa 158
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 143 tgggaatcttgatgatgctgcatcggcaataa 174
|||||||||||||||||||||| |||||||||
Sbjct: 108 tgggaatcttgatgatgctgcagcggcaataa 139
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 28 ctgtttgcgggtgtggcatcatcaagattcacaa 61
|||||||||| || |||||||||||||||||||
Sbjct: 1 ctgtttgcggatggagcatcatcaagattcacaa 34
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaata 173
||||||||||||||||||||||||||||
Sbjct: 92 gaatcttgatgatgctgcatcggcaata 119
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 tgtttgcgggtgtggcatcatcaagattcaca 60
||||||| ||||| ||||||||||||||||||
Sbjct: 2 tgtttgcaggtgtagcatcatcaagattcaca 33
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaata 173
||||||||||||||||||||||||||||
Sbjct: 91 gaatcttgatgatgctgcatcggcaata 118
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 29 tgtttgcgggtgtggcatcatcaagattcaca 60
||||||| ||||| ||||||||||||||||||
Sbjct: 2 tgtttgcaggtgtagcatcatcaagattcaca 33
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa
Japonica Group
Length = 109
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 29 tgtttgcgggtgtggcatcatcaagattcaca 60
|||||||||| |||||||||||||||||||||
Sbjct: 2 tgtttgcgggcgtggcatcatcaagattcaca 33
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 54.0 bits (27), Expect = 8e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaat 172
|||||||||||||||||||||||||||
Sbjct: 87 gaatcttgatgatgctgcatcggcaat 113
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tgtggcatcatcaagattcaca 60
||||||||||||||||||||||
Sbjct: 12 tgtggcatcatcaagattcaca 33
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 143 tgggaatcttgatgatgctgcatcgg 168
||||||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgcatcgg 231
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaataa 174
|||||||||||||||||||||||| ||||
Sbjct: 144 gaatcttgatgatgctgcatcggccataa 172
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 142 atgggaatcttgatgatgctgcatc 166
|||||||||||||||||||||||||
Sbjct: 98 atgggaatcttgatgatgctgcatc 122
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 143 tgggaatcttgatgatgctgcatcggcaa 171
|||||||||||||||||||||||| ||||
Sbjct: 65 tgggaatcttgatgatgctgcatcagcaa 93
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 143 tgggaatcttgatgatgctgcatcggcaa 171
|||||||||||||||||||||||| ||||
Sbjct: 93 tgggaatcttgatgatgctgcatcagcaa 121
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaataa 174
||||||||||||||||||||| |||||||
Sbjct: 61 gaatcttgatgatgctgcatcagcaataa 89
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 142 atgggaatcttgatgatgctgcatc 166
|||||||||||||||||||||||||
Sbjct: 102 atgggaatcttgatgatgctgcatc 126
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 139 gagatgggaatcttgatgatgctgcatcggcaa 171
|||||| ||||||||||||||||||||| ||||
Sbjct: 86 gagatgagaatcttgatgatgctgcatcagcaa 118
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaata 173
|||||||||||||||||||||| |||||
Sbjct: 184 gaatcttgatgatgctgcatcgacaata 211
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 tttgcgggtgtggcatcatcaagattcaca 60
|||| |||||| ||||||||||||||||||
Sbjct: 4 tttgtgggtgtagcatcatcaagattcaca 33
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 139 gagatgggaatcttgatgatgctgcatc 166
|||||| |||||||||||||||||||||
Sbjct: 103 gagatgagaatcttgatgatgctgcatc 130
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaat 172
||||||||||||||||||| |||||||
Sbjct: 84 gaatcttgatgatgctgcagcggcaat 110
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 143 tgggaatcttgatgatgctgcatcggc 169
|||||||||||||||||||||| ||||
Sbjct: 106 tgggaatcttgatgatgctgcagcggc 132
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 139 gagatgggaatcttgatgatgctgcat 165
|||||| ||||||||||||||||||||
Sbjct: 75 gagatgagaatcttgatgatgctgcat 101
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 143 tgggaatcttgatgatgctgcat 165
|||||||||||||||||||||||
Sbjct: 123 tgggaatcttgatgatgctgcat 145
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 143 tgggaatcttgatgatgctgcat 165
|||||||||||||||||||||||
Sbjct: 121 tgggaatcttgatgatgctgcat 143
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 143 tgggaatcttgatgatgctgcat 165
|||||||||||||||||||||||
Sbjct: 158 tgggaatcttgatgatgctgcat 180
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 141 gatgggaatcttgatgatgctgcatcggcaa 171
|||| ||||||||||||||||||||| ||||
Sbjct: 78 gatgagaatcttgatgatgctgcatcagcaa 108
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaa 171
||||||||||||||||||||| ||||
Sbjct: 114 gaatcttgatgatgctgcatcagcaa 139
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 146 gaatcttgatgatgctgcatcggcaa 171
||||||||||||||||||||| ||||
Sbjct: 139 gaatcttgatgatgctgcatcagcaa 164
