miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;AADN02035864.1/43695-43788 9031:Gallus gallus
(chicken)
Length = 94
Score = 186 bits (94), Expect = 4e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 gtgtatcctcagctttgagaactgaattccatgggttgtaattgaatcctttgtcagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtatcctcagctttgagaactgaattccatgggttgtaattgaatcctttgtcagacc 60
Query: 61 catggggctcagttcttcagcttggatatttctg 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 catggggctcagttcttcagcttggatatttctg 94
>RF00691;mir-146;ABQF01019538.1/14288-14195 59729:Taeniopygia
guttata
Length = 94
Score = 149 bits (75), Expect = 8e-36
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 8 ctcagctttgagaactgaattccatgggttgtaattgaatcctttgtcagacccatgggg 67
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8 ctcagctttgagaactgaattccatgggttgtaattgaatctgctgtcagacccatgggg 67
Query: 68 ctcagttcttcagcttggatatttctg 94
|||||||||||||||||||||||||||
Sbjct: 68 ctcagttcttcagcttggatatttctg 94
>RF00691;mir-146;AAKN02022618.1/8712-8798 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 3 gtatcctcagctttgagaactgaattccatgggttgt 39
|||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtatcctcagctttgagaactgaattccatgggttgt 39
>RF00691;mir-146;ABRQ01081253.1/1221-1135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 gtgtatcctcagctttgagaactgaattccatgggt 36
||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtatcctcagctttgagaactgaattccatgggt 36
>RF00691;mir-146;AAPN01152393.1/27352-27260 9258:Ornithorhynchus
anatinus (platypus)
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 8 ctcagctttgagaactgaattccatgggttgtaattgaatcctttgtcagacccatgggg 67
|||||||||||||||||||||||| ||||||| |||| | || || ||||||| |||||
Sbjct: 8 ctcagctttgagaactgaattccacgggttgtgattgca-actctgacagacccgtgggg 66
Query: 68 ctcagttcttcagct 82
|||||||||| ||||
Sbjct: 67 ctcagttcttgagct 81
>RF00691;mir-146;AAFR03012754.1/25474-25388 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 tgtatcctcagctttgagaactgaattccatgggttgt 39
|||||| |||||||||||||||||||||||||||||||
Sbjct: 2 tgtatcttcagctttgagaactgaattccatgggttgt 39
>RF00691;mir-146;CAAA01220328.1/4488-4574 10090:Mus musculus
(house mouse)
Length = 87
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 gtgtatcctcagctttgagaactgaattccatgggtt 37
|||||||| ||||| ||||||||||||||||||||||
Sbjct: 1 gtgtatccccagctctgagaactgaattccatgggtt 37
>RF00691;mir-146;AAVX01275541.1/618-713 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 cagctttgagaactgaattccatggg 35
||||| ||||||||||||||||||||
Sbjct: 10 cagctgtgagaactgaattccatggg 35
