miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| |||||||||||||||| || || || | |||||||||||| |||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagatta-tggatacagtgtgcggaagtgctt 59
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 65.9 bits (33), Expect = 6e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 18 tctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatt 70
|||||| ||||| ||||||||||| |||||||| ||| |||||||||||||||
Sbjct: 18 tctgcataaactagactactgaaaccagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 63.9 bits (32), Expect = 2e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 7 gtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgcta 66
|||||| || ||||||||| ||| |||||||||| |||||||| ||| |||||||||||
Sbjct: 7 gtggaaacatttctgcacacactatactactgaaaccagtgtgcagaagtgcttctgcta 66
Query: 67 catt 70
||||
Sbjct: 67 catt 70
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 17 ttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatt 70
||||||||||||| || || || |||||||||| |||||||||||||||||||
Sbjct: 17 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 60.0 bits (30), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| |||||||||||||||| || | ||| |||||||| |||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcga-ttttgatgccagtgtgcagaaatgctt 59
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 58.0 bits (29), Expect = 1e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 2 atctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttc 61
||||||||||| || |||||||||||| ||||||| ||| ||||||| ||| |||||
Sbjct: 2 atctagtggaaacatctctgcacaaactagactactaaaaccagtgtgtagaagggcttc 61
Query: 62 tgctacatt 70
|||||||||
Sbjct: 62 tgctacatt 70
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 52.0 bits (26), Expect = 9e-07
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 9 ggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctaca 68
||||||| ||||||||||||| | ||||| || ||||||||||||||||||||| ||||
Sbjct: 9 ggaatcatttctgcacaaactcgg-tactggaa-cagtgtgcggaaatgcttctggtaca 66
Query: 69 tt 70
||
Sbjct: 67 tt 68
>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 31 gactactgaaatcagtgtgcggaaatgcttctgctacatt 70
||||| ||||| ||||||| ||||||||||||| ||||||
Sbjct: 39 gactattgaaaccagtgtgtggaaatgcttctgttacatt 78
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 43 cagtgtgcggaaatgcttctgctacatt 70
||||||| ||||||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 43 cagtgtgcggaaatgcttctgctacatt 70
|||||||||||| |||||||||||||||
Sbjct: 43 cagtgtgcggaagtgcttctgctacatt 70
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tcagtgtgcggaaatgcttctgct 65
||||||||||||||||||||||||
Sbjct: 45 tcagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tcagtgtgcggaaatgcttctgct 65
||||||||||||||||||||||||
Sbjct: 45 tcagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 38 gaaatcagtgtgcggaaatgcttctgctaca 68
|||| ||||||| ||||||||||||||||||
Sbjct: 37 gaaaccagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 agtgtgcggaaatgcttctgctacat 69
|||||| |||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69
>RF00693;mir-147;AAKN02005203.1/37099-37168 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 17 ttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatt 70
|||||||||||| ||||| |||| ||||||| || ||||||||||||||||
Sbjct: 17 ttctgcacaaaccagactattgaatccagtgtggggcgatgcttctgctacatt 70
>RF00693;mir-147;AAGW01139212.1/2371-2440 9986:Oryctolagus
cuniculus (rabbit)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 17 ttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatt 70
||||||||| || ||||| || || ||||||||||||||||||| | ||||||
Sbjct: 17 ttctgcacacaccagactattgcaagcagtgtgcggaaatgcttccgttacatt 70
>RF00693;mir-147;AAPN01075732.1/1773-1705 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 9 ggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttc 61
|||||||| |||||||||||| | || ||| || ||||||||||| |||||||
Sbjct: 9 ggaatcacctctgcacaaactcgtcttctg-aaccagtgtgcggagatgcttc 60
>RF00693;mir-147;AAGV020068496.1/506-569 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 64
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 41 atcagtgtgcggaaatgcttctgct 65
|||||||||| ||||||||||||||
Sbjct: 35 atcagtgtgcagaaatgcttctgct 59
>RF00693;mir-147;ABRN01165333.1/9979-9911 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 gaaatcagtgtgcggaaatgcttctgcta 66
|||| ||||||| ||||||||||||||||
Sbjct: 37 gaaaccagtgtgtggaaatgcttctgcta 65
>RF00693;mir-147;AANH01000229.1/71291-71222 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 70
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 gtgtgcggaaatgcttctgct 65
|||||||||||||||||||||
Sbjct: 45 gtgtgcggaaatgcttctgct 65
