miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;AADN02026326.1/5940-5866 9031:Gallus gallus
(chicken)
Length = 75
Score = 149 bits (75), Expect = 7e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 16 cttcagtgaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgtt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgtt 60
Query: 76 gactgtaccttgagg 90
|||||||||||||||
Sbjct: 61 gactgtaccttgagg 75
>RF00076;mir-181;AAPN01414527.1/5237-5163 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgttgactgta 82
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgagatagagaagaaaccatcgaccgttgactgta 67
Query: 83 ccttgagg 90
||||||||
Sbjct: 68 ccttgagg 75
>RF00076;mir-181;AAFR03041358.1/50589-50664 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 87.7 bits (44), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 16 cttcagtgaacattcaacgctgtcggtgag-tttgagaactaagaaaaaccatcgaccgt 74
|||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttttagatttaaaagaaaccatcgaccgt 60
Query: 75 tgactgtaccttgagg 90
||||||| ||||||||
Sbjct: 61 tgactgtgccttgagg 76
>RF00076;mir-181;AAWZ01041904.1/21191-21117 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 70/76 (92%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 16 cttcagtgaacattcaacgctgtcggtgagtttgagaactaaga-aaaaccatcgaccgt 74
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttg-gaatcgagagcaaaccatcgaccgt 59
Query: 75 tgactgtaccttgagg 90
||||||||||||||||
Sbjct: 60 tgactgtaccttgagg 75
>RF00076;mir-181;AANH01010005.1/225761-225835 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 83.8 bits (42), Expect = 4e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 21 gtgaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgttgactg 80
||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttgagctttgaccaaaaccatcgaccgttgactg 65
Query: 81 taccttgagg 90
|||| |||||
Sbjct: 66 taccctgagg 75
>RF00076;mir-181;AAVX01524458.1/119-46 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 16 cttcagtgaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgtt 75
|||||||||||||||||||||||||||||||||| | | | ||| ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttg-ggatttagatgaaccatcgaccgtt 59
Query: 76 gactgtacc 84
|||||||||
Sbjct: 60 gactgtacc 68
>RF00076;mir-181;ABRO01503714.1/705-629 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 79.8 bits (40), Expect = 5e-15
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttgagaactaagaa--aaaccatcgaccgttgactg 80
||||||||||||||||||||||||||| ||| ||| || |||||| |||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgggaattaaaaaagaaaccaccgaccgttgactg 67
Query: 81 taccttg 87
|||||||
Sbjct: 68 taccttg 74
>RF00076;mir-181;BAAE01064819.1/183-106 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 60/67 (89%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 21 gtgaacattcaacgctgtcggtgagtttgag---aactaagaaaaaccatcgaccgttga 77
||||||||||||||||||||||||||||||| || | | ||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttgagctaaattgaagaaaaccatcgaccgttga 65
Query: 78 ctgtacc 84
|||||||
Sbjct: 66 ctgtacc 72
>RF00076;mir-181;ABQF01033784.1/94537-94612 59729:Taeniopygia
guttata
Length = 76
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/71 (90%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 16 cttcagtgaacattcaacgctgtcggtgagtttgagaactaa--gaaaaaccatcgaccg 73
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttg-gaattaaagtgaaaaccatcgaccg 59
Query: 74 ttgactgtacc 84
|||| ||||||
Sbjct: 60 ttgattgtacc 70
>RF00076;mir-181;CR407590.7/46720-46647 7955:Danio rerio
(zebrafish)
Length = 74
Score = 71.9 bits (36), Expect = 1e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgttgactgta 82
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttttag-acattgaaaaaccatcgaccgttgactgtg 66
Query: 83 ccttgagg 90
|| |||||
Sbjct: 67 ccctgagg 74
>RF00076;mir-181;CAAK05046427.1/2246-2169 7955:Danio rerio
(zebrafish)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 18 tcagtgaacattcaacgctgtcggtgagtttgag---aactaagaaaaaccatcgaccgt 74
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagtttgagctaaatggaaaaaaaccatcgaccgt 62
Query: 75 tgactgtacc 84
||| ||||||
Sbjct: 63 tgattgtacc 72
>RF00076;mir-181;CAAE01007899.1/3116-3043 99883:Tetraodon
nigroviridis
Length = 74
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 21 gtgaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgttgactg 80
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttga-cactgaacgaaaccatcgaccgttgactg 64
Query: 81 tacc 84
||||
Sbjct: 65 tacc 68
>RF00076;mir-181;BAAE01046132.1/387-313 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgttgactgta 82
||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgtgctacaatcaaaaccatcgaccgttgactgta 67
Query: 83 ccttgag 89
|| ||||
Sbjct: 68 ccctgag 74
>RF00076;mir-181;ABRQ01199017.1/7675-7601 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 22 tgaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgttgactgt 81
|||||||||||||||||||||||||||| || | | |||||||| |||||||||||||
Sbjct: 8 tgaacattcaacgctgtcggtgagtttgggatttga-aaaaaccactgaccgttgactgt 66
Query: 82 accttg 87
||||||
Sbjct: 67 accttg 72
>RF00076;mir-181;AAVX01060902.1/6914-6990 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 16 cttcagtgaacattcaacgctgtcggtgagtttg 49
||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAVX01605662.1/457-382 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 63.9 bits (32), Expect = 3e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 17 ttcagtgaacattcaacgctgtcggtgagtttga-gaactaagaaaaaccatcgaccgtt 75
||||| |||||||||||||||||||||||||||| | | || |||||||||||||||
Sbjct: 2 ttcagggaacattcaacgctgtcggtgagtttgatgctattggagaaaccatcgaccgtt 61
Query: 76 gactgtaccttg 87
|| |||||||||
Sbjct: 62 gattgtaccttg 73
>RF00076;mir-181;BX649502.4/41327-41254 7955:Danio rerio
(zebrafish)
Length = 74
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 18 tcagtgaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgttga 77
|||| ||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct: 3 tcagagaacattcaacgctgtcggtgagtttg-caagtgagaaaaaccatcgagtgttga 61
Query: 78 ctgtacc 84
||||||
Sbjct: 62 gtgtacc 68
>RF00076;mir-181;CAAE01007782.1/1794-1718 99883:Tetraodon
nigroviridis
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttgagaactaag--aaaaaccatcgaccgttgactg 80
||||||||||||||||||||||||||| ||| || |||||||||||| |||||| ||
Sbjct: 8 gaacattcaacgctgtcggtgagtttggtgactcagaaaaaaaccatcgagcgttgagtg 67
Query: 81 tacctt 86
||||||
Sbjct: 68 tacctt 73
>RF00076;mir-181;BAAE01247698.1/2692-2765 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 61.9 bits (31), Expect = 1e-09
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttgagaactaagaa-aaaccatcgaccgttgactgt 81
||||||||||||||||||||||||||| | || ||||| |||||||||| |||||| |||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgtg-acaaagaagaaaccatcgagcgttgagtgt 66
Query: 82 acc 84
|||
Sbjct: 67 acc 69
>RF00076;mir-181;AANH01003633.1/162880-162804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 19 cagtgaacattcaacgctgtcggtgagttt 48
||||||||||||||||||||||||||||||
Sbjct: 4 cagtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
(tammar wallaby)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttgag 51
|||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgag 36
>RF00076;mir-181;CAAB01002295.1/30499-30571 31033:Takifugu
rubripes
Length = 73
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgttgactgta 82
|||||||||| ||||||||||||||| || | || ||||||||||||||||||||||
Sbjct: 8 gaacattcaamgctgtcggtgagttt--gacccgagccaaaccatcgaccgttgactgta 65
Query: 83 cc 84
||
Sbjct: 66 cc 67
>RF00076;mir-181;CU914488.12/799-875 7955:Danio rerio (zebrafish)
Length = 77
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 21 gtgaacattcaacgctgtcggtgagttt 48
||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt 33
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 61 aaaccatcgaccgttgactgtaccttgagg 90
|||||||||||||||||||||||| |||||
Sbjct: 48 aaaccatcgaccgttgactgtaccctgagg 77
>RF00076;mir-181;AANH01005494.1/52551-52630 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 21 gtgaacattcaacgctgtcggtgagttt 48
||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttg 49
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABRR01288494.1/77-2 30538:Lama pacos (alpaca)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttg 49
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABPN01054789.1/181-255 163638:Rhamphochromis esox
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttg 49
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01011358.1/4650-4577 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagtttg 49
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CAAB01002581.1/17658-17586 31033:Takifugu
rubripes
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 23 gaacattcaacgctgtcggtgagttt 48
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;BAAE01266276.1/154-232 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 24 aacattcaacgctgtcggtgagtttg 49
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAWZ01014044.1/10482-10407 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 aacattcaacgctgtcggtgagttt 48
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01009059.1/35-115 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 aacattcaacgctgtcggtgagttt 48
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 aaaaaccatcgaccgttgactgt 81
|||||||||||||||||||||||
Sbjct: 50 aaaaaccatcgaccgttgactgt 72
>RF00076;mir-181;AAIY01317332.1/8-77 9371:Echinops telfairi (small
Madagascar hedgehog)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 18 tcagtgaacattcaacgctgtcggtgagtt 47
||||||||||| ||||||||||||||||||
Sbjct: 3 tcagtgaacat-caacgctgtcggtgagtt 31
