miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AANN01313225.1/1014-1098 9365:Erinaceus europaeus
(western European hedgehog)
Length = 85
Score = 145 bits (73), Expect = 1e-34
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttgatccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
|||||||||||||||||||| ||||
Sbjct: 61 aaacatattcctacagtgtcttgcc 85
>RF00672;mir-190;AAVX01574962.1/139-55 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 137 bits (69), Expect = 3e-32
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatccaactatatatc 60
|||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 tgcaagactctgtgtgatatgtttgatatattaggttgttattaaagccaactatatatc 60
Query: 61 aaacatattcctacagtgtcctgcc 85
||||||||||||| |||||||||||
Sbjct: 61 aaacatattcctatagtgtcctgcc 85
>RF00672;mir-190;BAAE01125523.1/2749-2664 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 107 bits (54), Expect = 2e-23
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 tgcaggactctgtgtgatatgtttgatatattaggttgttatttaatcc-aactatatat 59
|||||| |||||| ||||||||||||||||||||||||| ||| | ||| ||||||||||
Sbjct: 1 tgcagggctctgtctgatatgtttgatatattaggttgtaattcagtcccaactatatat 60
Query: 60 caaacatattcctacagtgtcc 81
||||||||||||||||||||||
Sbjct: 61 caaacatattcctacagtgtcc 82
>RF00672;mir-190;AAVX01028763.1/1639-1724 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 10 ctgtgtgatatgtttgatatattaggttgttatttaatc-caactatatatcaaacatat 68
|||| ||||||||||| ||| ||||||||||| | || | |||| |||||||||||||||
Sbjct: 10 ctgtctgatatgtttgctatgttaggttgttactcaaactcaacgatatatcaaacatat 69
Query: 69 t 69
|
Sbjct: 70 t 70
>RF00672;mir-190;AAPN01024655.1/497-583 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/34 (94%), Gaps = 2/34 (5%)
Strand = Plus / Plus
Query: 8 ctctgtgtgatatgtttgatatattaggttgtta 41
|||||||||||||||||| ||||||||||||||
Sbjct: 8 ctctgtgtgatatgtttg--atattaggttgtta 39
>RF00672;mir-190;AAVX01176080.1/200-287 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 ctctgtgtgatatgtttgatat 29
||||||||||||||||||||||
Sbjct: 8 ctctgtgtgatatgtttgatat 29
