miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27416_mdo-mir-196b:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagca 60
||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagca 60
Query: 61 cgaaactgccttaattacttcagttg 86
||| |||||||| |||||||||||||
Sbjct: 61 cgatactgccttcattacttcagttg 86
>31526_oan-mir-196b:mirbase
Length = 85
Score = 121 bits (61), Expect = 9e-29
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagca 60
||||| |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 aactggtctgtgatttaggtagtttcctgttgttggggctccacctttctctcgacagca 60
Query: 61 cgaaactgccttaattacttcagtt 85
||| |||||||| ||||||||||||
Sbjct: 61 cgacactgccttcattacttcagtt 85
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 95.6 bits (48), Expect = 5e-21
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 9 tgtggtttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactg 68
||||||||||||||||| ||||||||||| | |||||||||||||||| || |||||||
Sbjct: 9 tgtggtttaggtagttttatgttgttgggcattcacctttctctctacaacaagaaactg 68
Query: 69 ccttaattacttcagt 84
|||||||||| |||||
Sbjct: 69 ccttaattacatcagt 84
>31917_mmu-mir-196b:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 8e-20
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagca 60
||||| || ||| ||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 1 aactggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagca 59
Query: 61 cgaaactgccttaattacttcagttg 86
||| |||||||| |||||||||||||
Sbjct: 60 cgacactgccttcattacttcagttg 85
>32784_rno-mir-196b:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 8e-20
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagca 60
||||| || ||| ||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 1 aactggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagca 59
Query: 61 cgaaactgccttaattacttcagttg 86
||| |||||||| |||||||||||||
Sbjct: 60 cgacactgccttcattacttcagttg 85
>33270_bta-mir-196b:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 8e-20
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagca 60
||||| || ||| ||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 1 aactggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacagca 59
Query: 61 cgaaactgccttaattacttcagttg 86
||| |||||||| |||||||||||||
Sbjct: 60 cgacactgccttcattacttcagttg 85
>28509_hsa-mir-196b:mirbase
Length = 84
Score = 89.7 bits (45), Expect = 3e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctta 73
||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 13 tttaggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgccttc 71
Query: 74 attacttcagttg 86
|||||||||||||
Sbjct: 72 attacttcagttg 84
>30889_ppy-mir-196b:mirbase
Length = 84
Score = 89.7 bits (45), Expect = 3e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctta 73
||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 13 tttaggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgccttc 71
Query: 74 attacttcagttg 86
|||||||||||||
Sbjct: 72 attacttcagttg 84
>30273_ptr-mir-196b:mirbase
Length = 83
Score = 87.7 bits (44), Expect = 1e-18
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctta 73
||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 13 tttaggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgccttc 71
Query: 74 attacttcagtt 85
||||||||||||
Sbjct: 72 attacttcagtt 83
>34027_ssc-mir-196b:mirbase
Length = 80
Score = 83.8 bits (42), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctta 73
||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 12 tttaggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgccttc 70
Query: 74 attacttcag 83
||||||||||
Sbjct: 71 attacttcag 80
>34028_ssc-mir-196b:mirbase
Length = 80
Score = 83.8 bits (42), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctta 73
||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 12 tttaggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgccttc 70
Query: 74 attacttcag 83
||||||||||
Sbjct: 71 attacttcag 80
>27081_eca-mir-196b:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 8e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctta 73
||||||||||||| |||||||||| |||| ||||||||| ||||||||| ||||||||
Sbjct: 13 tttaggtagtttcctgttgttggga-tccagctttctctcgacagcacgacactgccttc 71
Query: 74 attacttcagttg 86
|||||||||||||
Sbjct: 72 attacttcagttg 84
>27792_mml-mir-196b:mirbase
Length = 75
Score = 71.9 bits (36), Expect = 8e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctta 73
||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 13 tttaggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgccttc 71
Query: 74 atta 77
||||
Sbjct: 72 atta 75
>26754_cfa-mir-196b:mirbase
Length = 58
Score = 65.9 bits (33), Expect = 5e-12
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 16 taggtagtttcatgttgttggggctccacctttctctctacagcacgaaactgcctt 72
||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 1 taggtagtttcctgttgttggga-tccacctttctctcgacagcacgacactgcctt 56
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||||||||||
Sbjct: 16 tctgtggtttaggtagtttcatgttgttggg 46
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 62 gaaactgccttaattacttcagtt 85
||||||||||||||||| ||||||
Sbjct: 73 gaaactgccttaattacgtcagtt 96
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||||||||||
Sbjct: 15 tctgtggtttaggtagtttcatgttgttggg 45
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggg 37
|||||||||||| |||||||||||||||||||||||
Sbjct: 9 aactgctctgtgaattaggtagtttcatgttgttggg 45
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttgggg 38
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttgggg 33
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttgggg 38
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttgggg 33
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
||||||||||||||||||||||||||||
Sbjct: 15 gtggtttaggtagtttcatgttgttggg 42
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
||||||||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggg 32
>27515_age-mir-196:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 16 tctgtggcttaggtagtttcatgttgttggg 46
>27580_lla-mir-196:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 16 tctgtggcttaggtagtttcatgttgttggg 46
>27791_mml-mir-196a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 16 tctgtggcttaggtagtttcatgttgttggg 46
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 16 tctgtggcttaggtagtttcatgttgttggg 46
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 16 tctgtggcttaggtagtttcatgttgttggg 46
>30112_ppa-mir-196:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 16 tctgtggcttaggtagtttcatgttgttggg 46
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 16 tctgtggcttaggtagtttcatgttgttggg 46
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 16 tctgtggcttaggtagtttcatgttgttggg 46
>31525_oan-mir-196a:mirbase
Length = 114
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 20 tctgtggcttaggtagtttcatgttgttggg 50
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 7 tctgtggcttaggtagtttcatgttgttggg 37
>32783_rno-mir-196a:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 16 tctgtggcttaggtagtttcatgttgttggg 46
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 7 tctgtggcttaggtagtttcatgttgttggg 37
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 13 tctgtggcttaggtagtttcatgttgttggg 43
>25515_pma-mir-196a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
||||| |||||||||||||||||||||||
Sbjct: 5 gtggtctaggtagtttcatgttgttgggg 33
>34350_dre-mir-196c:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||| ||||||||||||
Sbjct: 17 gtggtttaggtagtttgatgttgttgggg 45
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 14 ttaggtagtttcatgttgttggg 36
>27080_eca-mir-196a:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 5 ttaggtagtttcatgttgttggg 27
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttggg 28
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>34349_dre-mir-196b:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
|||||| |||||||||||||| |||||||||
Sbjct: 2 tctgtgatttaggtagtttcaagttgttggg 32
>26753_cfa-mir-196a-2:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taggtagtttcatgttgttggg 37
||||||||||||||||||||||
Sbjct: 1 taggtagtttcatgttgttggg 22
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taggtagtttcatgttgttggg 37
||||||||||||||||||||||
Sbjct: 24 taggtagtttcatgttgttggg 45
>25516_pma-mir-196b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
||||| |||||||| |||||||||||||
Sbjct: 5 gtggtgtaggtagtatcatgttgttggg 32
>34351_dre-mir-196d:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tttaggtagtttcatgttgttggg 37
|||||||||||| |||||||||||
Sbjct: 6 tttaggtagttttatgttgttggg 29
