miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacagca 63
Query: 61 cgaaactgccttaattacttcagttgat 88
||||||||||||||||||||||||||||
Sbjct: 64 cgaaactgccttaattacttcagttgat 91
>RF00256;mir-196;AC149508.2/54375-54285 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 91
Score = 95.6 bits (48), Expect = 1e-19
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 9 tgtggtttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactg 68
||||||||||||||||| ||||||||||| | |||||||||||||||| || |||||||
Sbjct: 12 tgtggtttaggtagttttatgttgttgggcattcacctttctctctacaacaagaaactg 71
Query: 69 ccttaattacttcagt 84
|||||||||| |||||
Sbjct: 72 ccttaattacatcagt 87
>RF00256;mir-196;ABRQ01101197.1/2188-2097 9813:Procavia capensis
(cape rock hyrax)
Length = 92
Score = 83.8 bits (42), Expect = 4e-16
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctct--acag 58
||||| || ||| ||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct: 4 aactggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctctcgacag 62
Query: 59 cacgaaactgccttaattacttcagttga 87
||||| |||||||| ||||||||||||||
Sbjct: 63 cacgacactgccttcattacttcagttga 91
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 9 tgtggtttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactg 68
|||| |||||||||||||||||||||||||||||| ||| |||||| | || |||||||
Sbjct: 12 tgtgatttaggtagtttcatgttgttggggctccaaatttatctctataacaagaaactg 71
Query: 69 ccttaattacttcagtt 85
||| ||||||| |||||
Sbjct: 72 cctgaattactccagtt 88
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 73.8 bits (37), Expect = 4e-13
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 9 tgtggtttaggtagtttcatgttgttggggctccacctttctctctacagcacgaaactg 68
|||| |||||||||||||||||||||||||||| | | | |||||||| ||||||||||
Sbjct: 12 tgtgatttaggtagtttcatgttgttggggctcaag-tctatctctacaacacgaaactg 70
Query: 69 ccttaattacttcagtt 85
||| ||||||| |||||
Sbjct: 71 cctgaattactgcagtt 87
>RF00256;mir-196;AAWZ01035904.1/53611-53705 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 63.9 bits (32), Expect = 3e-10
Identities = 75/89 (84%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggggct----ccacctttctctctac 56
||||| || ||| ||||||||||||||||||||||||||| | || | |||| ||
Sbjct: 4 aactggtcggtgatttaggtagtttcatgttgttggggctatggctctctctttctcgac 63
Query: 57 agcacgaaactgccttaattacttcagtt 85
|||||||||||||||| ||||||||||||
Sbjct: 64 agcacgaaactgccttcattacttcagtt 92
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 69/79 (87%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 9 tgtggtttaggtagtttcatgttgttggggctccacctttc--tctctacagcacgaaac 66
|||| |||||||||||||||||||||||||||||| |||| || ||||| |||||||
Sbjct: 11 tgtgatttaggtagtttcatgttgttggggctcca-ttttcaatccctacaacacgaaag 69
Query: 67 tgccttaattacttcagtt 85
|||||||||| || |||||
Sbjct: 70 tgccttaattgctccagtt 88
>RF00256;mir-196;AADN02023992.1/310-221 9031:Gallus gallus
(chicken)
Length = 90
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||||||||||
Sbjct: 10 tctgtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AADN02070198.1/2795-2886 9031:Gallus gallus
(chicken)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggg 37
|||||||||||| |||||||||||||||||||||||
Sbjct: 4 aactgctctgtgaattaggtagtttcatgttgttggg 40
>RF00256;mir-196;BAAE01222104.1/303-214 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;AB232922.1/118684-118594 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
|||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;AAVX01058829.1/1428-1517 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 tgtggtttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||||||||
Sbjct: 12 tgtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;CR382300.12/76136-76225 7955:Danio rerio
(zebrafish)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;EU025682.1/4924-5014 8030:Salmo salar (Atlantic
salmon)
Length = 91
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
||||||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;ABRQ01001823.1/1565-1475 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
||||||| |||||||||||||||||||||||
Sbjct: 10 tctgtggcttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AF464190.1/27447-27540 7757:Petromyzon marinus
(sea lamprey)
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttgggg 38
||||| |||||||||||||||||||||||
Sbjct: 13 gtggtctaggtagtttcatgttgttgggg 41
>RF00256;mir-196;AAFR03029824.1/20829-20920 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggg 37
|||||||| |||| |||||||||||| ||||||||||
Sbjct: 4 aactgctcagtgggttaggtagtttcctgttgttggg 40
>RF00256;mir-196;AAWZ01014174.1/114912-115004 28377:Anolis
carolinensis (green anole)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 aactgctctgtggtttaggtagtttcatgttgttggg 37
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 4 aactgttctgtggattaggtagtttcacgttgttggg 40
>RF00256;mir-196;FJ497006.1/141864-141954 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tgtggtttaggtagtttcatgttgttggg 37
|||| ||||||||||||||||||||||||
Sbjct: 12 tgtgttttaggtagtttcatgttgttggg 40
>RF00256;mir-196;DQ481664.1/123101-123190 31033:Takifugu rubripes
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tgtggtttaggtagtttcatgttgttggg 37
||||||||||||||| |||||||||||||
Sbjct: 12 tgtggtttaggtagtctcatgttgttggg 40
>RF00256;mir-196;AC149041.19/33709-33798 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gtggtttaggtagtttcatgttgttggg 37
|||||||||||||| |||||||||||||
Sbjct: 13 gtggtttaggtagtctcatgttgttggg 40
>RF00256;mir-196;AAGU02055285.1/1599-1508 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 ttaggtagtttcatgttgttggg 37
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcatgttgttggg 40
>RF00256;mir-196;BX927395.18/57996-57904 7955:Danio rerio
(zebrafish)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 tctgtggtttaggtagtttcatgttgttggg 37
|||||| |||||||||||||| |||||||||
Sbjct: 10 tctgtgatttaggtagtttcaagttgttggg 40
