miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AADN02040853.1/32451-32527 9031:Gallus gallus
(chicken)
Length = 77
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctgg 60
Query: 65 taacgatgtttaaaggg 81
|||||||||||||||||
Sbjct: 61 taacgatgtttaaaggg 77
>RF00241;mir-8;AAPN01278104.1/1392-1318 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 93.7 bits (47), Expect = 3e-19
Identities = 62/66 (93%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 gtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctggtaac 68
||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct: 5 gtgggcatcttactagacagtgctggatt--tgggatctactctaacactgtctggtaac 62
Query: 69 gatgtt 74
||||||
Sbjct: 63 gatgtt 68
>RF00241;mir-8;AAVX01056733.1/885-961 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctgg 64
|||||||| |||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 1 ctctgtggacatcttactagacagtgctggattgcactcatagattctaacactgtctgg 60
Query: 65 taacgatgtttaa 77
|||||||||||||
Sbjct: 61 taacgatgtttaa 73
>RF00241;mir-8;ABRQ01306924.1/1769-1693 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 79.8 bits (40), Expect = 5e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctgg 64
||||||||||||||||| ||||||||||||||||| | | | |||||||||||||||
Sbjct: 1 ctctgtgggcatcttaccggacagtgctggatttctcagctagactctaacactgtctgg 60
Query: 65 taacgatgtttaaagg 80
|||||||||| |||||
Sbjct: 61 taacgatgttcaaagg 76
>RF00241;mir-8;AAWZ01036826.1/12431-12507 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 75.8 bits (38), Expect = 8e-14
Identities = 70/78 (89%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttcttggatct-attctaacactgtctg 63
|||||||| |||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct: 1 ctctgtggacatcttactagacagtgctggattgtgtgc-tctgattctaacactgtctg 59
Query: 64 gtaacgatgtttaaaggg 81
||||||||||| ||||||
Sbjct: 60 gtaacgatgttcaaaggg 77
>RF00241;mir-8;AANN01836629.1/1372-1445 9365:Erinaceus europaeus
(western European hedgehog)
Length = 74
Score = 65.9 bits (33), Expect = 8e-11
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctgg 64
||||||||||||||||| ||||||||||||||| | | || | |||||||||||||||
Sbjct: 1 ctctgtgggcatcttaccggacagtgctggattt--tcgctc-actctaacactgtctgg 57
Query: 65 taacgatgtttaaagg 80
|||||||||| |||||
Sbjct: 58 taacgatgttcaaagg 73
>RF00241;mir-8;AAGW01121226.1/219-144 9986:Oryctolagus cuniculus
(rabbit)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 5 ctctgtgggcatcttactagacagtgctggatt 37
|||||||||||||||||| ||||||||||||||
Sbjct: 1 ctctgtgggcatcttactggacagtgctggatt 33
>RF00241;mir-8;AALT01163752.1/983-908 42254:Sorex araneus
(European shrew)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtttaaagg 80
||||||||||||||||||||||||| |||||
Sbjct: 45 tctaacactgtctggtaacgatgttcaaagg 75
>RF00241;mir-8;CR925720.9/83600-83676 7955:Danio rerio (zebrafish)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 ttctaacactgtctggtaacgatgttt 75
|||||||||||||||||||||||||||
Sbjct: 45 ttctaacactgtctggtaacgatgttt 71
>RF00241;mir-8;AANH01002761.1/40227-40150 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 ttctaacactgtctggtaacgatgttt 75
|||||||||||||||||||||||||||
Sbjct: 46 ttctaacactgtctggtaacgatgttt 72
>RF00241;mir-8;BAAE01261092.1/898-975 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgttt 75
||||||||||||||||||||||||||
Sbjct: 47 tctaacactgtctggtaacgatgttt 72
>RF00241;mir-8;CU855953.4/78055-77979 7955:Danio rerio (zebrafish)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ttctaacactgtctggtaacgatg 72
||||||||||||||||||||||||
Sbjct: 45 ttctaacactgtctggtaacgatg 68
