miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27422_mdo-mir-204:mirbase
Length = 97
Score = 147 bits (74), Expect = 2e-36
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 8 gactgtgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcag 67
|||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||
Sbjct: 6 gactatgtgacctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcag 65
Query: 68 ggacagcaaagggatgctcagctgtcgtct 97
||||||||||||||||||||||||||||||
Sbjct: 66 ggacagcaaagggatgctcagctgtcgtct 95
>26504_tgu-mir-204-2:mirbase
Length = 72
Score = 143 bits (72), Expect = 3e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 17 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaa 60
Query: 77 agggatgctcag 88
||||||||||||
Sbjct: 61 agggatgctcag 72
>34632_fru-mir-204:mirbase
Length = 92
Score = 113 bits (57), Expect = 2e-26
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||||||||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
Query: 73 gcaaagggatgctcagctgtc 93
|||||||||||||||||||||
Sbjct: 60 gcaaagggatgctcagctgtc 80
>34779_tni-mir-204a:mirbase
Length = 93
Score = 105 bits (53), Expect = 6e-24
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||||||||||||||||||||||||||||||||||||| || | | |||||||||||
Sbjct: 1 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 59
Query: 73 gcaaagggatgctcagc 89
|||||||||||||||||
Sbjct: 60 gcaaagggatgctcagc 76
>33288_bta-mir-211:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 6e-18
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 10 ctgtgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcaggg 69
||||||||||||||||||||||||||||||||| |||| | | || |||| |||||||
Sbjct: 9 ctgtgtgacctgtgggcttccctttgtcatcctttgcccagggttctgagtggggcaggg 68
Query: 70 acagcaaagggatgctcag 88
||||||||||| |||||||
Sbjct: 69 acagcaaaggggtgctcag 87
>31530_oan-mir-204:mirbase
Length = 119
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 25 gcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaagggatg 83
||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 29 gcttccctttgtcatcctatgcctggaagtcaaaatggggcagggacagcaaagggatg 87
>25826_xtr-mir-204-2:mirbase
Length = 88
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctg 49
|||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgtgacctgtgggcttccctttgtcatcctatgcctg 38
>26771_cfa-mir-211:mirbase
Length = 100
Score = 73.8 bits (37), Expect = 2e-14
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||| ||||||||||||||||||||||| ||||| | | || || | ||||||||||
Sbjct: 8 tgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggaca 67
Query: 73 gcaaagggatgctcagctgtc 93
|||||||| ||||||| ||||
Sbjct: 68 gcaaaggggtgctcagttgtc 88
>27095_eca-mir-211:mirbase
Length = 87
Score = 73.8 bits (37), Expect = 2e-14
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||| ||||||||||||||||||||||| ||||| | | || |||| |||||||||
Sbjct: 1 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagggact 60
Query: 73 gcaaagggatgctcagctgtc 93
|||||||| ||||||| ||||
Sbjct: 61 gcaaaggggtgctcagttgtc 81
>25825_xtr-mir-204-1:mirbase
Length = 105
Score = 71.9 bits (36), Expect = 8e-14
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
||||||| |||||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 17 tgtgacccatgggcttccctttgtcatcctatgcctgagaatgctggagaggcagggaca 76
Query: 73 gcaaagggatgctcag 88
||||||||||||||||
Sbjct: 77 gcaaagggatgctcag 92
>31938_mmu-mir-211:mirbase
Length = 106
Score = 71.9 bits (36), Expect = 8e-14
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||||||||||||||||||||||||||| ||||| | || ||||||||| |||||
Sbjct: 12 tgtgacctgtgggcttccctttgtcatcctttgcctaggcctctgagtgaggcaaggaca 71
Query: 73 gcaaaggg 80
||||||||
Sbjct: 72 gcaaaggg 79
>34361_dre-mir-204-1:mirbase
Length = 93
Score = 71.9 bits (36), Expect = 8e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggag 52
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 4 tgtgacctgtggacttccctttgtcatcctatgcctggag 43
>27807_mml-mir-211:mirbase
Length = 109
Score = 65.9 bits (33), Expect = 5e-12
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||| ||||||||||||||||||||||| ||||| | | || || ||||||||||
Sbjct: 11 tgtgacttgtgggcttccctttgtcatcctttgcctagggctctgagcagggcagggaca 70
Query: 73 gcaaagggatgctcagctgtc 93
|||||||| ||||||| ||||
Sbjct: 71 gcaaaggggtgctcagttgtc 91
>25995_gga-mir-204-1:mirbase
Length = 104
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctg 49
||||||| |||| ||||||||||||||||||||||||
Sbjct: 19 tgtgacccgtggacttccctttgtcatcctatgcctg 55
>28235_mne-mir-211:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||| ||||||||||||||||||||||| |||| | | || || ||||||||||
Sbjct: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
Query: 73 gcaaagggatgctcagctgtc 93
|||||||| ||||||| ||||
Sbjct: 71 gcaaaggggtgctcagttgtc 91
>28529_hsa-mir-211:mirbase
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||| ||||||||||||||||||||||| |||| | | || || ||||||||||
Sbjct: 12 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
Query: 73 gcaaagggatgctcagctgtc 93
|||||||| ||||||| ||||
Sbjct: 72 gcaaaggggtgctcagttgtc 92
>30288_ptr-mir-211:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||| ||||||||||||||||||||||| |||| | | || || ||||||||||
Sbjct: 12 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
Query: 73 gcaaagggatgctcagctgtc 93
|||||||| ||||||| ||||
Sbjct: 72 gcaaaggggtgctcagttgtc 92
>34362_dre-mir-204-2:mirbase
Length = 124
Score = 58.0 bits (29), Expect = 1e-09
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 22 tgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggacagcaaaggga 81
|||| ||||||||||||||||||||||| || || |||||| |||||||||||||||
Sbjct: 32 tgggtttccctttgtcatcctatgcctgcagttcctgatgaggctgggacagcaaaggga 91
Query: 82 tgctcagctgtcg 94
| |||| |||||
Sbjct: 92 ggttcagatgtcg 104
>26000_gga-mir-211:mirbase
Length = 74
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 18 cctgtgggcttccctttgtcatcctatgcctg 49
|||||| |||||||||||||||||||||||||
Sbjct: 1 cctgtgagcttccctttgtcatcctatgcctg 32
>26505_tgu-mir-204-3:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 18 cctgtgggcttccctttgtcatcctatgcctg 49
|||||| |||||||||||||||||||||||||
Sbjct: 2 cctgtgagcttccctttgtcatcctatgcctg 33
>26506_tgu-mir-204-4:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 18 cctgtgggcttccctttgtcatcctatgcctg 49
|||||| |||||||||||||||||||||||||
Sbjct: 2 cctgtgagcttccctttgtcatcctatgcctg 33
>32802_rno-mir-211:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcct 48
|||||||| ||||||||||||||||||||| |||||
Sbjct: 12 tgtgacctctgggcttccctttgtcatcctttgcct 47
>34780_tni-mir-204b:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctgga 51
|||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 2 tgtgacctatggacttccctttgttatcctatgcctgga 40
>26503_tgu-mir-204-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 5 gtggacttccctttgtcatcctatgcctg 33
>26507_tgu-mir-204-5:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 25 gcttccctttgtcatcctatgcctg 49
|||||||||||||||||||||||||
Sbjct: 1 gcttccctttgtcatcctatgcctg 25
>27624_sla-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>27801_mml-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28232_mne-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28328_ggo-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>28523_hsa-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>30116_ppa-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>30282_ptr-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>30900_ppy-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>30906_ppy-mir-211:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
|||||| ||||| ||||||||||||||||| |||| | | || || ||||||||||
Sbjct: 12 tgtgacttgtggacttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
Query: 73 gcaaagggatgctcagctgtc 93
|||||||| ||||||| ||||
Sbjct: 72 gcaaaggggtgctcagttgtc 92
>32794_rno-mir-204:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 27 gtggacttccctttgtcatcctatgcctg 55
>33282_bta-mir-204:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 17 gtggacttccctttgtcatcctatgcctg 45
>34034_ssc-mir-204:mirbase
Length = 109
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 gtgggcttccctttgtcatcctatgcctg 49
|||| ||||||||||||||||||||||||
Sbjct: 26 gtggacttccctttgtcatcctatgcctg 54
>27090_eca-mir-204b-2:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 cttccctttgtcatcctatgcctg 49
||||||||||||||||||||||||
Sbjct: 5 cttccctttgtcatcctatgcctg 28
>31930_mmu-mir-204:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 26 cttccctttgtcatcctatgcctg 49
||||||||||||||||||||||||
Sbjct: 5 cttccctttgtcatcctatgcctg 28
>25522_pma-mir-204:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 ttccctttgtcatcctatgcctg 49
|||||||||||||||||||||||
Sbjct: 9 ttccctttgtcatcctatgcctg 31
>26764_cfa-mir-204:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 ttccctttgtcatcctatgcctg 49
|||||||||||||||||||||||
Sbjct: 1 ttccctttgtcatcctatgcctg 23
