miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31532_oan-mir-206:mirbase
Length = 122
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 35 acatgcttctttatatccccatatggattacgctgctatggaatgtaaggaagtgtgtgg 94
Query: 67 tttc 70
||||
Sbjct: 95 tttc 98
>27424_mdo-mir-206:mirbase
Length = 76
Score = 111 bits (56), Expect = 7e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 7 acatgcttctttatatccccatatgaattatgctgctatggaatgtaaggaagtgtgtgg 66
Query: 67 tttc 70
||||
Sbjct: 67 tttc 70
>27803_mml-mir-206:mirbase
Length = 86
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15 acatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtgtgg 74
Query: 67 tttc 70
||||
Sbjct: 75 tttc 78
>28234_mne-mir-206:mirbase
Length = 86
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15 acatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtgtgg 74
Query: 67 tttc 70
||||
Sbjct: 75 tttc 78
>28525_hsa-mir-206:mirbase
Length = 86
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15 acatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtgtgg 74
Query: 67 tttc 70
||||
Sbjct: 75 tttc 78
>30284_ptr-mir-206:mirbase
Length = 85
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 14 acatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtgtgg 73
Query: 67 tttc 70
||||
Sbjct: 74 tttc 77
>30902_ppy-mir-206:mirbase
Length = 86
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15 acatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtgtgg 74
Query: 67 tttc 70
||||
Sbjct: 75 tttc 78
>26766_cfa-mir-206:mirbase
Length = 60
Score = 95.6 bits (48), Expect = 4e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 1 acatgcttctttatatccccatacggattacgttgctatggaatgtaaggaagtgtgtgg 60
>27092_eca-mir-206-2:mirbase
Length = 69
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 6 acatgcttctttatatccccatacggattactttgctatggaatgtaaggaagtgtgtgg 65
Query: 67 tttc 70
||||
Sbjct: 66 tttc 69
>33284_bta-mir-206:mirbase
Length = 86
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 15 acatgcttctttatatccccatacggattactttgctatggaatgtaaggaagtgtgtgg 74
Query: 67 tttc 70
||||
Sbjct: 75 tttc 78
>34036_ssc-mir-206:mirbase
Length = 80
Score = 69.9 bits (35), Expect = 2e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtg 65
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 12 acatgcttctttatatccccatacggattacttgactatggaatgtaaggaagtgtgtg 70
>25829_xtr-mir-206:mirbase
Length = 70
Score = 63.9 bits (32), Expect = 1e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 66
|||||||||||||||| |||||||| | || || ||||||||||||||||||||||||
Sbjct: 7 acatgcttctttatatacccatatgaactacattgttatggaatgtaaggaagtgtgtgg 66
>34364_dre-mir-206-1:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 43 tatggaatgtaaggaagtgtgtggtttcaggg 74
||||||||||||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaggaagtgtgtggtttcaggg 88
>32796_rno-mir-206:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 gctatggaatgtaaggaagtgtgtggttt 69
|||||||||||||||||||||||||||||
Sbjct: 47 gctatggaatgtaaggaagtgtgtggttt 75
>31932_mmu-mir-206:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 ctatggaatgtaaggaagtgtgtggttt 69
||||||||||||||||||||||||||||
Sbjct: 43 ctatggaatgtaaggaagtgtgtggttt 70
>34365_dre-mir-206-2:mirbase
Length = 109
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 42 ctatggaatgtaaggaagtgtgtggtttcag 72
||||||||||||||||||||||||| |||||
Sbjct: 61 ctatggaatgtaaggaagtgtgtggcttcag 91
>32648_rno-mir-1:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 tgctatggaatgtaaggaagtgtgt 64
||||||||||||||| |||||||||
Sbjct: 49 tgctatggaatgtaaagaagtgtgt 73
>33064_rno-mir-3571:mirbase
Length = 111
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 40 tgctatggaatgtaaggaagtgtgt 64
||||||||||||||| |||||||||
Sbjct: 50 tgctatggaatgtaaagaagtgtgt 26
>34184_dre-mir-1-1:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 48/56 (85%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 6 gacatgcttctttatatccccatatggattag-gctgctatggaatgtaaggaagt 60
||||| ||||||||||| |||||||| | || || |||||||||||||| |||||
Sbjct: 22 gacatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagt 77
>26937_eca-mir-1-2:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatgga 33
|||| ||||||||||| ||||||||||
Sbjct: 10 acatacttctttatatgcccatatgga 36
>27640_mml-mir-1-1:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatgga 33
|||| ||||||||||| ||||||||||
Sbjct: 10 acatacttctttatatgcccatatgga 36
>28350_hsa-mir-1-1:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatgga 33
|||| ||||||||||| ||||||||||
Sbjct: 7 acatacttctttatatgcccatatgga 33
>30137_ptr-mir-1-1:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatgga 33
|||| ||||||||||| ||||||||||
Sbjct: 6 acatacttctttatatgcccatatgga 32
>30742_ppy-mir-1-1:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 7 acatgcttctttatatccccatatgga 33
|||| ||||||||||| ||||||||||
Sbjct: 7 acatacttctttatatgcccatatgga 33
