miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26005_gga-mir-216c:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 2 agtcacagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaatt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 agtcacagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaatt 27
Query: 62 acctgtagagattctacaatctggca 87
||||||||||||||||||||||||||
Sbjct: 26 acctgtagagattctacaatctggca 1
>26512_tgu-mir-216b:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 6 acagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacct 65
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 acagactgggaaatctctgcaggcaagtgtgatgtctttatagcaatctcacaattacct 60
Query: 66 gtagagattct 76
|||||||||||
Sbjct: 61 gtagagattct 71
>27100_eca-mir-216b:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
|||||||| |||||||||||||||||||||||||| || || |||| |||| ||||| |
Sbjct: 5 cagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccg 64
Query: 67 tagagattctacaatctg 84
||||||||||||| ||||
Sbjct: 65 tagagattctacagtctg 82
>33293_bta-mir-216b:mirbase
Length = 82
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
|||||||| |||||||||||||||||||||||||| || || |||| |||| ||||| |
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccg 61
Query: 67 tagagattctacaatctg 84
||||||||||||| ||||
Sbjct: 62 tagagattctacagtctg 79
>27812_mml-mir-216b:mirbase
Length = 82
Score = 75.8 bits (38), Expect = 5e-15
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
|||||||| |||||||||||||||||||||||||| | || |||| |||| ||||| |
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttacccg 61
Query: 67 tagagattctacaatctg 84
||||||||||||| ||||
Sbjct: 62 tagagattctacagtctg 79
>30910_ppy-mir-216b:mirbase
Length = 82
Score = 75.8 bits (38), Expect = 5e-15
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
|||||||| |||||||||||||||||||||||||| | || |||| |||| ||||| |
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttacccg 61
Query: 67 tagagattctacaatctg 84
||||||||||||| ||||
Sbjct: 62 tagagattctacagtctg 79
>31944_mmu-mir-216b:mirbase
Length = 86
Score = 75.8 bits (38), Expect = 5e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
||||||||||||||||||||||||||||||||||| | || || | |||| |||||||
Sbjct: 5 cagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaaccacacacttacctg 64
Query: 67 tagagattct 76
||||||||||
Sbjct: 65 tagagattct 74
>32807_rno-mir-216b:mirbase
Length = 102
Score = 75.8 bits (38), Expect = 5e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
||||||||||||||||||||||||||||||||||| | || |||| |||| |||| ||
Sbjct: 11 cagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttacttg 70
Query: 67 tagagattct 76
||||||||||
Sbjct: 71 tagagattct 80
>32808_rno-mir-216b:mirbase
Length = 102
Score = 75.8 bits (38), Expect = 5e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
||||||||||||||||||||||||||||||||||| | || |||| |||| |||| ||
Sbjct: 11 cagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttacttg 70
Query: 67 tagagattct 76
||||||||||
Sbjct: 71 tagagattct 80
>28534_hsa-mir-216b:mirbase
Length = 82
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
|||||||| |||||||||||||||||||||||||| | | |||| |||| ||||| |
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttacccg 61
Query: 67 tagagattctacaatctg 84
||||||||||||| ||||
Sbjct: 62 tagagattctacagtctg 79
>30292_ptr-mir-216b:mirbase
Length = 81
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
|||||||| |||||||||||||||||||||||||| | | |||| |||| ||||| |
Sbjct: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttacccg 61
Query: 67 tagagattctacaatctg 84
||||||||||||| ||||
Sbjct: 62 tagagattctacagtctg 79
>26776_cfa-mir-216b:mirbase
Length = 62
Score = 65.9 bits (33), Expect = 4e-12
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 16 aaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctgtagagattc 75
|||||||||||||||||||||||||| || || |||| |||| ||||| ||||||||||
Sbjct: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
Query: 76 t 76
|
Sbjct: 61 t 61
>27306_eca-mir-1461:mirbase
Length = 56
Score = 56.0 bits (28), Expect = 4e-09
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 18 atctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctgtagagat 73
|||||||||||||||||||||||| || || |||| |||| ||||| ||||||||
Sbjct: 56 atctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagat 1
>34371_dre-mir-216b-1:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 gactgggaaatctctgcaggcaaatgtgatgt 40
||||||| ||||||||||||||| ||||||||
Sbjct: 4 gactgggtaatctctgcaggcaactgtgatgt 35
>34372_dre-mir-216b-2:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 gactgggaaatctctgcaggcaaatgtgatgt 40
||||||| ||||||||||||||| ||||||||
Sbjct: 3 gactgggtaatctctgcaggcaactgtgatgt 34
>25334_csa-mir-216b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 aatctctgcaggcaaatgtgatgtc 41
||||||||||||||| |||||||||
Sbjct: 17 aatctctgcaggcaactgtgatgtc 41
