miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26004_gga-mir-216b:mirbase
Length = 89
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1 tgccagattgtagaatctctacaggtaattgtgagattgctataaagacatcacatttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tgccagattgtagaatctctacaggtaattgtgagattgctataaagacatcacatttgc 28
Query: 61 ctgcagagatttcccagtctgtgact 86
||||||||||||||||||||||||||
Sbjct: 27 ctgcagagatttcccagtctgtgact 2
>26512_tgu-mir-216b:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Minus
Query: 12 agaatctctacaggtaattgtgagattgctataaagacatcacatttgcctgcagagatt 71
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 71 agaatctctacaggtaattgtgagattgctataaagacatcacacttgcctgcagagatt 12
Query: 72 tcccagtctgt 82
|||||||||||
Sbjct: 11 tcccagtctgt 1
>27100_eca-mir-216b:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 4 cagattgtagaatctctacaggtaattgtgagattgctataaagacatcacatttgcctg 63
|||| |||||||||||||| ||||| |||| |||| || || |||||||||||||||||
Sbjct: 82 cagactgtagaatctctacgggtaagtgtgtgatttctttagtgacatcacatttgcctg 23
Query: 64 cagagatttcccagtctg 81
||||||||| ||||||||
Sbjct: 22 cagagattttccagtctg 5
>33293_bta-mir-216b:mirbase
Length = 82
Score = 83.8 bits (42), Expect = 2e-17
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 4 cagattgtagaatctctacaggtaattgtgagattgctataaagacatcacatttgcctg 63
|||| |||||||||||||| ||||| |||| |||| || || |||||||||||||||||
Sbjct: 79 cagactgtagaatctctacgggtaagtgtgtgatttctttagtgacatcacatttgcctg 20
Query: 64 cagagatttcccagtctg 81
||||||||| ||||||||
Sbjct: 19 cagagattttccagtctg 2
>27812_mml-mir-216b:mirbase
Length = 82
Score = 75.8 bits (38), Expect = 4e-15
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 4 cagattgtagaatctctacaggtaattgtgagattgctataaagacatcacatttgcctg 63
|||| |||||||||||||| ||||| |||| |||| || | |||||||||||||||||
Sbjct: 79 cagactgtagaatctctacgggtaagtgtgtgatttcttcagtgacatcacatttgcctg 20
Query: 64 cagagatttcccagtctg 81
||||||||| ||||||||
Sbjct: 19 cagagattttccagtctg 2
>30910_ppy-mir-216b:mirbase
Length = 82
Score = 75.8 bits (38), Expect = 4e-15
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 4 cagattgtagaatctctacaggtaattgtgagattgctataaagacatcacatttgcctg 63
|||| |||||||||||||| ||||| |||| |||| || | |||||||||||||||||
Sbjct: 79 cagactgtagaatctctacgggtaagtgtgtgatttcttcagtgacatcacatttgcctg 20
Query: 64 cagagatttcccagtctg 81
||||||||| ||||||||
Sbjct: 19 cagagattttccagtctg 2
>31944_mmu-mir-216b:mirbase
Length = 86
Score = 75.8 bits (38), Expect = 4e-15
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 12 agaatctctacaggtaattgtgagattgctataaagacatcacatttgcctgcagagatt 71
||||||||||||||||| |||| | || || | |||||||||||||||||||||||||
Sbjct: 74 agaatctctacaggtaagtgtgtggtttcttcagtgacatcacatttgcctgcagagatt 15
Query: 72 tcccagtctg 81
||||||||||
Sbjct: 14 tcccagtctg 5
>32807_rno-mir-216b:mirbase
Length = 102
Score = 75.8 bits (38), Expect = 4e-15
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 12 agaatctctacaggtaattgtgagattgctataaagacatcacatttgcctgcagagatt 71
|||||||||||| |||| |||| |||| || | |||||||||||||||||||||||||
Sbjct: 80 agaatctctacaagtaagtgtgtgatttcttcagtgacatcacatttgcctgcagagatt 21
Query: 72 tcccagtctg 81
||||||||||
Sbjct: 20 tcccagtctg 11
>32808_rno-mir-216b:mirbase
Length = 102
Score = 75.8 bits (38), Expect = 4e-15
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 12 agaatctctacaggtaattgtgagattgctataaagacatcacatttgcctgcagagatt 71
|||||||||||| |||| |||| |||| || | |||||||||||||||||||||||||
Sbjct: 80 agaatctctacaagtaagtgtgtgatttcttcagtgacatcacatttgcctgcagagatt 21
Query: 72 tcccagtctg 81
||||||||||
Sbjct: 20 tcccagtctg 11
>28534_hsa-mir-216b:mirbase
Length = 82
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 4 cagattgtagaatctctacaggtaattgtgagattgctataaagacatcacatttgcctg 63
|||| |||||||||||||| ||||| |||| |||| | | |||||||||||||||||
Sbjct: 79 cagactgtagaatctctacgggtaagtgtgtgatttcctcagtgacatcacatttgcctg 20
Query: 64 cagagatttcccagtctg 81
||||||||| ||||||||
Sbjct: 19 cagagattttccagtctg 2
>30292_ptr-mir-216b:mirbase
Length = 81
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 4 cagattgtagaatctctacaggtaattgtgagattgctataaagacatcacatttgcctg 63
|||| |||||||||||||| ||||| |||| |||| | | |||||||||||||||||
Sbjct: 79 cagactgtagaatctctacgggtaagtgtgtgatttcctcagtgacatcacatttgcctg 20
Query: 64 cagagatttcccagtctg 81
||||||||| ||||||||
Sbjct: 19 cagagattttccagtctg 2
>26776_cfa-mir-216b:mirbase
Length = 62
Score = 65.9 bits (33), Expect = 4e-12
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 12 agaatctctacaggtaattgtgagattgctataaagacatcacatttgcctgcagagatt 71
||||||||||| ||||| |||| |||| || || |||||||||||||||||||||||||
Sbjct: 61 agaatctctacgggtaagtgtgtgatttctttagtgacatcacatttgcctgcagagatt 2
Query: 72 t 72
|
Sbjct: 1 t 1
>27306_eca-mir-1461:mirbase
Length = 56
Score = 56.0 bits (28), Expect = 4e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 15 atctctacaggtaattgtgagattgctataaagacatcacatttgcctgcagagat 70
|||||||| ||||| |||| |||| || || ||||||||||||||||||||||||
Sbjct: 1 atctctacgggtaagtgtgtgatttctttagtgacatcacatttgcctgcagagat 56
>34371_dre-mir-216b-1:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 48 acatcacatttgcctgcagagatttcccagtc 79
|||||||| ||||||||||||||| |||||||
Sbjct: 35 acatcacagttgcctgcagagattacccagtc 4
>34372_dre-mir-216b-2:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 48 acatcacatttgcctgcagagatttcccagtc 79
|||||||| ||||||||||||||| |||||||
Sbjct: 34 acatcacagttgcctgcagagattacccagtc 3
>25334_csa-mir-216b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 47 gacatcacatttgcctgcagagatt 71
||||||||| |||||||||||||||
Sbjct: 41 gacatcacagttgcctgcagagatt 17
>34638_fru-mir-216b:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 49 catcacatttgcctgcagagatt 71
||||||| |||||||||||||||
Sbjct: 32 catcacagttgcctgcagagatt 10
>34786_tni-mir-216b:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 49 catcacatttgcctgcagagatt 71
||||||| |||||||||||||||
Sbjct: 32 catcacagttgcctgcagagatt 10
