miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;ABQF01022934.1/40019-40098 59729:Taeniopygia
guttata
Length = 80
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 gttccgccctagcagcacgtaaatattggagtgtcaaagaaaccttcaaccccaatatta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttccgccctagcagcacgtaaatattggagtgtcaaagaaaccttcaaccccaatatta 60
Query: 62 ttgtgctgctt 72
|||||||||||
Sbjct: 61 ttgtgctgctt 71
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 95.6 bits (48), Expect = 7e-20
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 gttccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatatt 60
||||||||||||||||||||||||||||| || || ||| ||||||| ||||||||||||
Sbjct: 1 gttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatatt 60
Query: 61 attgtgctgctt 72
||||||||||||
Sbjct: 61 attgtgctgctt 72
>RF00254;mir-16;ABRQ01058087.1/3558-3638 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 56.0 bits (28), Expect = 6e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 10 ctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatattattgtgct 68
||||||||||||||||||||| || || ||| ||| || ||| ||||||||||||||||
Sbjct: 9 ctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtgct 68
Query: 69 gctt 72
||||
Sbjct: 69 gctt 72
>RF00254;mir-16;BAAF04019869.1/1288-1368 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 54.0 bits (27), Expect = 2e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggagtgtcaaagaaaccttcaaccccaatatta 61
|||||||||||||||||||| |||| ||| || || ||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggcgtgtgaaaaaagcccccaaccccaatatta 60
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 10 ctagcagcacgtaaatattggagtgtcaaagaaaccttcaaccccaatattattgtgctg 69
||||||||||||||||||||| || | ||| ||| |||||||||||||||||||||
Sbjct: 9 ctagcagcacgtaaatattggtgt---agtgaagtcttaaaccccaatattattgtgctg 65
Query: 70 ctt 72
|||
Sbjct: 66 ctt 68
>RF00254;mir-16;ABQO011210750.1/1431-1352 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 aaccccaatattattgtgctgctt 72
||||||||||||||||||||||||
Sbjct: 48 aaccccaatattattgtgctgctt 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 ccgccctagcagcacgtaaatattgg 30
|||| |||||||||||||||||||||
Sbjct: 4 ccgctctagcagcacgtaaatattgg 29
>RF00254;mir-16;AAPN01018576.1/2935-3016 9258:Ornithorhynchus
anatinus (platypus)
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 gccctagcagcacgtaaatattggagt 33
|||||||||||||||||||| ||||||
Sbjct: 6 gccctagcagcacgtaaatactggagt 32
>RF00254;mir-16;ABRQ01105896.1/793-873 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggagt 33
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagt 32
>RF00254;mir-16;FP016183.6/26569-26489 7955:Danio rerio
(zebrafish)
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggagt 33
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagt 32
>RF00254;mir-16;CAAB01000586.1/28233-28314 31033:Takifugu rubripes
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggagt 33
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagt 32
>RF00254;mir-16;ABPK01051643.1/651-732 57307:Labeotropheus
fuelleborni
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggagt 33
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagt 32
>RF00254;mir-16;AANH01005347.1/82242-82163 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggagt 33
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagt 32
>RF00254;mir-16;AAVX01075355.1/994-914 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggagt 33
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagt 32
>RF00254;mir-16;BAAF04054536.1/5691-5613 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggag 32
||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggag 31
>RF00254;mir-16;AADN02013299.1/17205-17125 9031:Gallus gallus
(chicken)
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ctagcagcacgtaaatattggagtg 34
||||||||||||||||| |||||||
Sbjct: 9 ctagcagcacgtaaatactggagtg 33
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 ctagcagcacgtaaatattgg 30
|||||||||||||||||||||
Sbjct: 9 ctagcagcacgtaaatattgg 29
>RF00254;mir-16;CR478286.10/109802-109722 7955:Danio rerio
(zebrafish)
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggagtgt 35
|||||||||||||||||||| ||||
Sbjct: 10 tagcagcacgtaaatattggtgtgt 34
>RF00254;mir-16;CAAB01000783.1/48863-48783 31033:Takifugu rubripes
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tagcagcacgtaaatattggagtgt 35
|||||||||||||||||||| ||||
Sbjct: 10 tagcagcacgtaaatattggtgtgt 34
>RF00254;mir-16;AAVX01576107.1/322-406 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 ctagcagcacgtaaatattgg 30
|||||||||||||||||||||
Sbjct: 9 ctagcagcacgtaaatattgg 29
