miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00244;mir-26;AADN02000236.1/60671-60744 9031:Gallus gallus
(chicken)
Length = 74
Score = 101 bits (51), Expect = 1e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 6 cctggttcaagtaatccaggataggctgtatccattctaactcgcctattcttggttact 65
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttact 63
Query: 66 tgcactg 72
|||||||
Sbjct: 64 tgcactg 70
>RF00244;mir-26;AAWZ01018052.1/16808-16735 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 6 cctggttcaagtaatccaggataggctgtatccattctaactcgcctattcttggttact 65
|||| |||||||||||||||||||||||| | |||||| | | |||||| |||| |||||
Sbjct: 4 cctgcttcaagtaatccaggataggctgtgtgcattcttaatggcctatccttgattact 63
Query: 66 tgcactg 72
|||||||
Sbjct: 64 tgcactg 70
>RF00244;mir-26;AAFR03066353.1/7590-7517 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 74
Score = 60.0 bits (30), Expect = 4e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 6 cctggttcaagtaatccaggataggctgtatccattct 43
|||||||||||||||||||||||||||| | |||||||
Sbjct: 4 cctggttcaagtaatccaggataggctggacccattct 41
>RF00244;mir-26;AAWZ01020482.1/55030-55104 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 gcctggttcaagtaatccaggataggctgt 34
||||||||||||||||||||||||||||||
Sbjct: 3 gcctggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;BX322540.5/61735-61662 7955:Danio rerio
(zebrafish)
Length = 74
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 tggcctggttcaagtaatccaggataggct 32
||||||||||||||||||||||||||||||
Sbjct: 1 tggcctggttcaagtaatccaggataggct 30
>RF00244;mir-26;CAAB01005025.1/9613-9686 31033:Takifugu rubripes
Length = 74
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 ggcctggttcaagtaatccaggataggctg 33
||||||||||||||||||||||||||||||
Sbjct: 2 ggcctggttcaagtaatccaggataggctg 31
>RF00244;mir-26;AAPN01398538.1/2438-2512 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 cctggttcaagtaatccaggataggctgt 34
|||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;BAAE01056802.1/2019-1945 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 gcctggttcaagtaatccaggataggctg 33
|||||||||||||||||||||||||||||
Sbjct: 3 gcctggttcaagtaatccaggataggctg 31
>RF00244;mir-26;AAVX01037532.1/3546-3619 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 cctggttcaagtaatccaggataggctgt 34
|||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAFR03065617.1/19793-19721 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 4 ggcctggttcaagtaatccaggataggctgtatcca 39
|||| |||||||||||||||||||||||||| ||||
Sbjct: 2 ggccaggttcaagtaatccaggataggctgtgtcca 37
>RF00244;mir-26;AAIY01565150.1/1351-1424 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 tggcctggttcaagtaatccaggataggctgt 34
|||||| |||||||||||||||||||||||||
Sbjct: 1 tggcctcgttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AANH01008588.1/20720-20793 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 7 ctggttcaagtaatccaggataggctgt 34
||||||||||||||||||||||||||||
Sbjct: 5 ctggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;CR388015.14/128267-128194 7955:Danio rerio
(zebrafish)
Length = 74
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 cctggttcaagtaatccaggataggct 32
|||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggct 30
>RF00244;mir-26;BAAF04005282.1/5752-5678 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 4 ggcctggttcaagtaatccaggatagg 30
|||||||||||||||||||||||||||
Sbjct: 2 ggcctggttcaagtaatccaggatagg 28
>RF00244;mir-26;AAPN01108773.1/2160-2090 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ggttcaagtaatccaggataggctgt 34
||||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAGU02304058.1/2186-2113 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 ttcaagtaatccaggataggctgtatccat 40
|||||||||||||||||||||||| |||||
Sbjct: 9 ttcaagtaatccaggataggctgtttccat 38
>RF00244;mir-26;BX957326.8/213855-213781 7955:Danio rerio
(zebrafish)
Length = 75
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 gcctggttcaagtaatccaggatagg 30
||||||||||||||||||||||||||
Sbjct: 3 gcctggttcaagtaatccaggatagg 28
>RF00244;mir-26;CAAE01014542.1/1090180-1090107 99883:Tetraodon
nigroviridis
Length = 74
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 ggttcaagtaatccaggataggctgt 34
||||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;BAAF04021096.1/2358-2285 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gttcaagtaatccaggataggctgt 34
|||||||||||||||||||||||||
Sbjct: 8 gttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAFR03041753.1/18045-17975 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 71
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttcaagtaatccaggataggctgt 34
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAWZ01023535.1/24478-24552 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttcaagtaatccaggataggctgt 34
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;CAAE01014737.1/605161-605232 99883:Tetraodon
nigroviridis
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ggttcaagtaatccaggataggct 32
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AC098806.3/13416-13344 31033:Takifugu rubripes
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ggttcaagtaatccaggataggct 32
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AANH01005795.1/17049-17122 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ggttcaagtaatccaggataggct 32
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;BAAE01145746.1/1134-1208 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 ggttcaagtaatccaggataggct 32
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;CAAE01014553.1/1193335-1193409 99883:Tetraodon
nigroviridis
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 ggcctggttcaagtaatccaggatagg 30
|||||| ||||||||||||||||||||
Sbjct: 2 ggcctgattcaagtaatccaggatagg 28
>RF00244;mir-26;AANH01007655.1/107291-107217 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttcaagtaatccaggataggct 32
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
>RF00244;mir-26;ABRQ01183794.1/1462-1535 9813:Procavia capensis
(cape rock hyrax)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 gttcaagtaatccaggataggctgt 34
||||||||||||||||| |||||||
Sbjct: 8 gttcaagtaatccaggacaggctgt 32
