miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 129 bits (65), Expect = 5e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 ctggtttcacatggtggcttagattttcccactttgtatctagcaccatttgaaatcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ctggtttcacatggtggcttagattttcccactttgtatctagcaccatttgaaatcagt 66
Query: 61 gttct 65
|||||
Sbjct: 67 gttct 71
>RF00074;mir-29;ABRR01582801.1/1311-1240 30538:Lama pacos (alpaca)
Length = 72
Score = 79.8 bits (40), Expect = 4e-15
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 ctggtttcacatggtggcttagattttccca-ctttgtatctagcaccatttgaaatcag 59
|||||||||||||| |||||||||||| || |||||||||||||||||||||||||||
Sbjct: 7 ctggtttcacatggcggcttagattttttcatctttgtatctagcaccatttgaaatcaa 66
Query: 60 tgtt 63
||||
Sbjct: 67 tgtt 70
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 ctggtttcacatggtggcttagattttccca-ctttgtatctagcaccatttgaaatcag 59
|||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 7 ctggtttcacatggtgccttagatttccccatcgcagtatctagcaccatttgaaatcag 66
Query: 60 tgtt 63
||||
Sbjct: 67 tgtt 70
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 37 tatctagcaccatttgaaatcagtgttct 65
|||||||||||||||||||||||||||||
Sbjct: 41 tatctagcaccatttgaaatcagtgttct 69
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 38 atctagcaccatttgaaatcagtgttct 65
||||||||||||||||||||||||||||
Sbjct: 45 atctagcaccatttgaaatcagtgttct 72
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcagtgttct 65
|||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttct 71
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 38 atctagcaccatttgaaatcagtgttc 64
|||||||||||||||||||||||||||
Sbjct: 42 atctagcaccatttgaaatcagtgttc 68
>RF00074;mir-29;BX465862.7/161280-161350 7955:Danio rerio
(zebrafish)
Length = 71
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcagtgttct 65
|||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttct 71
>RF00074;mir-29;CAAE01013715.1/7308-7378 99883:Tetraodon
nigroviridis
Length = 71
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcagtgttct 65
|||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttct 71
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcagtgttct 65
|||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttct 71
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcagtgttct 65
|||||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgttct 72
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcagtgttct 65
|||||||||||||||||||||||||||
Sbjct: 44 tctagcaccatttgaaatcagtgttct 70
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 atctagcaccatttgaaatcagtgttct 65
|||||||||||||||||||| |||||||
Sbjct: 42 atctagcaccatttgaaatcggtgttct 69
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 atctagcaccatttgaaatcagtgttct 65
|||||||||||||||||||| |||||||
Sbjct: 42 atctagcaccatttgaaatcggtgttct 69
>RF00074;mir-29;CAAB01000294.1/99403-99473 31033:Takifugu rubripes
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 34 ttgtatctagcaccatttgaaatcagtgtt 63
|||| ||||||||||| |||||||||||||
Sbjct: 40 ttgtctctagcaccatgtgaaatcagtgtt 69
>RF00074;mir-29;AANH01001435.1/148652-148722 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 tctagcaccatttgaaatcagtgttc 64
||||||||||| ||||||||||||||
Sbjct: 45 tctagcaccatatgaaatcagtgttc 70
>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 tatctagcaccatttgaaatc 57
|||||||||||||||||||||
Sbjct: 38 tatctagcaccatttgaaatc 58
