miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 125 bits (63), Expect = 8e-29
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 1 cacaggttgggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtcccggcct 60
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 8 cacaggttgggatcagttgcaatgctgtgcgtttctgtggtattgcacttgtcccggcct 67
Query: 61 gttgaggttgg 71
|||||||||||
Sbjct: 68 gttgaggttgg 78
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 85.7 bits (43), Expect = 7e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 cacaggttgggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtcccggcct 60
|||||| ||||| | || |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 8 cacaggctgggaccggtcgcaatgctgtgtgtctgtgtggtattgcacttgtcccggcct 67
Query: 61 gttgaggttgg 71
|||||| ||||
Sbjct: 68 gttgagtttgg 78
>RF00464;mir-92;AAPN01258105.1/457-380 9258:Ornithorhynchus
anatinus (platypus)
Length = 78
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 3 caggttgggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtcccggcctgt 62
|||||||||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||
Sbjct: 10 caggttgggatcagttgcaatgctttgtttgtctacagtattgcgcttgttccggcctgt 69
Query: 63 tgaggttg 70
||||||||
Sbjct: 70 tgaggttg 77
>RF00464;mir-92;AAPN01101011.1/3771-3698 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 75.8 bits (38), Expect = 6e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 caggttgggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtcccggcctgt 62
||||||| ||||| |||||||||| ||| | |||||||||||||||||||||| ||||||
Sbjct: 10 caggttgagatcaattgcaatgctttgttt-tctgtggtattgcacttgtcccagcctgt 68
Query: 63 tgaggt 68
||||||
Sbjct: 69 tgaggt 74
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 75.8 bits (38), Expect = 6e-14
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 1 cacaggttgggatcagttgcaatgctgtgtgtgtctgt--ggtattgcacttgtcccggc 58
||||||||||||| || |||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 8 cacaggttgggatttgtcgcaatgctgtgtttctctgtatggtattgcacttgtcccggc 67
Query: 59 ctgttgaggttgg 71
|||||||| ||||
Sbjct: 68 ctgttgagtttgg 80
>RF00464;mir-92;AAPN01220813.1/2769-2846 9258:Ornithorhynchus
anatinus (platypus)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1 cacaggttgggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtcccggcct 60
||||||||||||||||| ||||||| ||| |||| |||||||||| || ||| ||||||
Sbjct: 8 cacaggttgggatcagtcacaatgctttgtctgtcagtggtattgccctggtctcggcct 67
Query: 61 gttgaggttg 70
|| |||||||
Sbjct: 68 gtcgaggttg 77
>RF00464;mir-92;AAPN01173316.1/4040-4117 9258:Ornithorhynchus
anatinus (platypus)
Length = 78
Score = 65.9 bits (33), Expect = 6e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 2 acaggttgggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtcccggcctg 61
|||||||||||||||| || |||| ||| |||||||||||||||| |||| |||| |||
Sbjct: 9 acaggttgggatcagtcgcgttgctttgtttgtctgtggtattgcatttgttccggtctg 68
Query: 62 ttgaggttg 70
|||| ||||
Sbjct: 69 ttgaagttg 77
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 36 tgtggtattgcacttgtcccggcctgttgagg 67
||||||||||||||||||||||||||||||||
Sbjct: 43 tgtggtattgcacttgtcccggcctgttgagg 74
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 37 gtggtattgcacttgtcccggcctgttgagg 67
|||||||||||||||||||||||||||||||
Sbjct: 45 gtggtattgcacttgtcccggcctgttgagg 75
>RF00464;mir-92;AAPN01314920.1/824-749 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 3 caggttgggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtcccggcctgt 62
||||||||||||||| | |||||||| || || |||||||||||||||||| ||||||
Sbjct: 10 caggttgggatcagtggaaatgctgtttgc--ctttggtattgcacttgtcccagcctgt 67
Query: 63 tgag 66
||||
Sbjct: 68 tgag 71
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 6e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 3 caggttgggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtcccggcctgt 62
||||||||||| || |||||||||||||| | ||||||||||||||||||||||||
Sbjct: 10 caggttgggattggtagcaatgctgtgtgttttgaaggtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AAPN01282049.1/2229-2308 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 52.0 bits (26), Expect = 9e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 6 gttgggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtccc 55
|||||| |||||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 13 gttgggctcagttgcgatgctttgcttgtctatggtattgcacttgtccc 62
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 ggtattgcacttgtcccggcctgttgagg 67
|||||||||||||||||||||||| ||||
Sbjct: 46 ggtattgcacttgtcccggcctgtggagg 74
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgttgagg 67
||||||||||||||||||||||| ||||
Sbjct: 53 gtattgcacttgtcccggcctgtggagg 80
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgttgagg 67
||||||||||||||||||||||| ||||
Sbjct: 53 gtattgcacttgtcccggcctgtggagg 80
>RF00464;mir-92;ABRR01417027.1/760-838 30538:Lama pacos (alpaca)
Length = 79
Score = 48.1 bits (24), Expect = 1e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 cacaggttgggatcagttgcaa-tgctgtgtgtgtctgtggtattgcacttgtcccggcc 59
|||||||||||||| ||||||| |||||||| | | ||| ||| |||||||||||||
Sbjct: 8 cacaggttgggatcggttgcaaatgctgtgttcctgtatggagttgaacttgtcccggcc 67
Query: 60 tgttgaggttgg 71
||||||| ||||
Sbjct: 68 tgttgagtttgg 79
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgttgagg 67
||||||||||||||||||||||| ||||
Sbjct: 50 gtattgcacttgtcccggcctgtggagg 77
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgttgagg 67
||||||||||||||||||||||| ||||
Sbjct: 51 gtattgcacttgtcccggcctgtggagg 78
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgttgagg 67
||||||||||||||||||||||| ||||
Sbjct: 50 gtattgcacttgtcccggcctgtggagg 77
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 ggtattgcacttgtcccggcctgt 62
||||||||||||||||||||||||
Sbjct: 45 ggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 ggtattgcacttgtcccggcctgt 62
||||||||||||||||||||||||
Sbjct: 45 ggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 ggtattgcacttgtcccggcctgt 62
||||||||||||||||||||||||
Sbjct: 45 ggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;AAPN01121175.1/4354-4275 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tattgcacttgtcccggcctgttgagg 67
|||||||||||||| ||||||||||||
Sbjct: 50 tattgcacttgtcctggcctgttgagg 76
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgt 62
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgt 62
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgt 62
|||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgt 70
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgt 62
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctgt 62
|||||||||||||||||||||||
Sbjct: 45 gtattgcacttgtcccggcctgt 67
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcctg 61
||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctg 70
>RF00464;mir-92;AAGJ02142502.1/20488-20574 7668:Strongylocentrotus
purpuratus
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 tattgcacttgtcccggcctg 61
|||||||||||||||||||||
Sbjct: 57 tattgcacttgtcccggcctg 77
>RF00464;mir-92;AAPN01215107.1/8361-8434 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 caggttgggatcagttgcaat 23
|||||||||||||||||||||
Sbjct: 10 caggttgggatcagttgcaat 30
>RF00464;mir-92;AAPN01044392.1/2547-2474 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 acaggttgggatcagttgcaatgct 26
|||||||||||||||||||| ||||
Sbjct: 9 acaggttgggatcagttgcagtgct 33
>RF00464;mir-92;AANN01710722.1/2155-2112 9365:Erinaceus europaeus
(western European hedgehog)
Length = 44
Score = 42.1 bits (21), Expect = 9e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 10 ggatcagttgcaatgctgtgtgtgtctgtggtattgcacttgtcc 54
|||||||||||| |||||||| | | | |||||||||||||||||
Sbjct: 1 ggatcagttgca-tgctgtgtttctgtatggtattgcacttgtcc 44
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcct 60
|||||||||||||||||||||
Sbjct: 51 gtattgcacttgtcccggcct 71
>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
floridae (Florida lancelet)
Length = 78
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 gtattgcacttgtcccggcct 60
|||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcct 67
