miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 caagttgtgcaaaagtgcttacagtgcaggtagagttcaggatctactgcagtttaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 caagttgtgcaaaagtgcttacagtgcaggtagagttcaggatctactgcagtttaagca 62
Query: 61 cttctggcattac 73
|||||||||||||
Sbjct: 63 cttctggcattac 75
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 3 agttgtgcaaaagtgcttacagtgcaggtagagttcaggatctactgcagtttaagcact 62
||||||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||
Sbjct: 5 agttgtgcaaaagtgcttacagtgcaggtagagctcagcacctactgcagtataagcact 64
Query: 63 tctggcat 70
||||||||
Sbjct: 65 tctggcat 72
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 4 gttgtgcaaaagtgcttacagtgcaggtagagttcaggatctactgcagtttaagcactt 63
|||||||||||||||||||||||||||||| || || | |||||||| | |||||||||
Sbjct: 6 gttgtgcaaaagtgcttacagtgcaggtagcttttagtacctactgcaatgtaagcactt 65
Query: 64 ctggcattac 73
|| |||||||
Sbjct: 66 ctagcattac 75
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 56.0 bits (28), Expect = 6e-08
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 11 aaaagtgcttacagtgcaggtagagttcag-gatctactgcagtttaagcacttct 65
||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||
Sbjct: 13 aaaagtgcttacagtgcaggtagttttcagagatctactgcaatgcaagcacttct 68
>RF00051;mir-17;AAWZ01041387.1/1182-1261 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 gtgcaaaagtgcttacagtgcaggtag 33
||||||||||||||| |||||||||||
Sbjct: 9 gtgcaaaagtgcttatagtgcaggtag 35
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 49/57 (85%), Gaps = 3/57 (5%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtagagttcagga---tctactgcagtttaagcacttct 65
|||||||||||||||||||||| | |||| | ||||||||||| | |||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgatcagaacagtctactgcagtgtgagcacttct 70
>RF00051;mir-17;AAFR03056382.1/1545-1623 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 gttgtgcaaaagtgcttacagtgcaggtag 33
|||||| ||||||||||| |||||||||||
Sbjct: 6 gttgtgtaaaagtgcttatagtgcaggtag 35
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AANH01005996.1/21109-21189 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtagagttca-ggatctactgcagtttaagcacttc 64
|||||||| ||||||||||||| | || |||||||||||||||| |||||||
Sbjct: 14 aaagtgctcacagtgcaggtagggcacacggatctactgcagtttgtgcacttc 67
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtag 33
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;CR390304.1/91-171 9031:Gallus gallus (chicken)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 12 aaagtgcttacagtgcaggtagagttca-ggatctactgcagtttaagcactt 63
|||||||||| ||||||||||| ||||| |||||||||| | |||||||||
Sbjct: 14 aaagtgcttatagtgcaggtagtgttcactaatctactgcattataagcactt 66
