miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 93.7 bits (47), Expect = 3e-19
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacac 61
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacac 60
Query: 62 taaatag 68
|||||||
Sbjct: 61 taaatag 67
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 89.7 bits (45), Expect = 4e-18
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 5 gagctgtggagtgtgacaatggtgtttgtgtcc-atctatcaaacgccattatcacacta 63
||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 62
Query: 64 aatag 68
|||||
Sbjct: 63 aatag 67
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/69 (91%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtccatct---atcaaacgccattatcac 59
||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtat-catctgtcgtcaaacgccattatcac 59
Query: 60 actaaatag 68
|||||||||
Sbjct: 60 actaaatag 68
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtgtccatct-atcaaacgccattatcacac 61
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1 cagagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacac 60
Query: 62 taaa 65
||||
Sbjct: 61 taaa 64
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 atcaaacgccattatcacactaaata 67
||||||||||||||||||||||||||
Sbjct: 42 atcaaacgccattatcacactaaata 67
