miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;ABRQ01266683.1/74-144 9813:Procavia capensis (cape
rock hyrax)
Length = 71
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 5 tctcaatccctgagaccctaacttgtgatgtttagcttttaaatccacgggttaggctct 64
||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct: 1 tctcaatccctgagaccctaatttgtgatgtttaccgtttaaatccacgggttaggctct 60
Query: 65 tgggagct 72
||||||||
Sbjct: 61 tgggagct 68
>RF00052;lin-4;AAWZ01018120.1/1937-2007 28377:Anolis carolinensis
(green anole)
Length = 71
Score = 99.6 bits (50), Expect = 4e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtgatgtttagcttttaaatccacgggttaggctcttgggag 70
|||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgacgtttagtttttaagtccacgggttaggctcttgggag 66
Query: 71 ct 72
||
Sbjct: 67 ct 68
>RF00052;lin-4;AAVX01166684.1/76-6 7868:Callorhinchus milii (ghost
shark)
Length = 71
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 5 tctcaatccctgagaccctaacttgtgatgtttagcttttaaatccacgggttaggctct 64
||||| |||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 1 tctcagtccctgagaccctaacttgtgatgtttaacttcttaatccacgggttaggctct 60
Query: 65 tggga 69
|||||
Sbjct: 61 tggga 65
>RF00052;lin-4;AAQQ01300049.1/868-937 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 70
Score = 95.6 bits (48), Expect = 7e-20
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 5 tctcaatccctgagaccctaacttgtgatgtttagcttttaaatccacgggttaggctct 64
||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 1 tctcagtccctgagaccctaacttgtgatgtttaccgtttaaat-cacgggttaggctct 59
Query: 65 tgggagct 72
||||||||
Sbjct: 60 tgggagct 67
>RF00052;lin-4;BX663520.9/242554-242624 7955:Danio rerio
(zebrafish)
Length = 71
Score = 65.9 bits (33), Expect = 6e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 8 caatccctgagaccctaacttgtgatgtttagcttttaaatccacgggttaggctcttgg 67
||||||||||||||||||||||||| |||| || ||| | ||||||||||| ||||||
Sbjct: 4 caatccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgg 63
Query: 68 gagct 72
|||||
Sbjct: 64 gagct 68
>RF00052;lin-4;BAAF04030494.1/1393-1463 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 63.9 bits (32), Expect = 2e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 5 tctcaatccctgagaccctaacttgtgatgtttagcttttaaatccacgggttaggctct 64
||||| |||||||||||||||||||||| |||| ||| | | | |||||||| ||||||
Sbjct: 1 tctcattccctgagaccctaacttgtgacgttttgctctgatgtgcacgggttgggctct 60
Query: 65 tgggagct 72
||||||||
Sbjct: 61 tgggagct 68
>RF00052;lin-4;AAGJ02034255.1/5710-5639 7668:Strongylocentrotus
purpuratus
Length = 72
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 aatccctgagaccctaacttgtgatgt 35
|||||||||||||||||||||||||||
Sbjct: 5 aatccctgagaccctaacttgtgatgt 31
>RF00052;lin-4;BAAF04027540.1/8397-8327 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 52.0 bits (26), Expect = 9e-07
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtgatgtttagcttttaaatccacgggttaggctcttgggag 70
|||||||||||||||||||||| ||| |||| | |||||||||| |||||| |||||
Sbjct: 7 tccctgagaccctaacttgtgacgttgttctttcatgtccacgggtttggctctcgggag 66
Query: 71 ct 72
||
Sbjct: 67 ct 68
>RF00052;lin-4;AAJJ01000960.1/11976-11909 7070:Tribolium castaneum
(red flour beetle)
Length = 68
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtgatgtt 36
||||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatgtt 32
>RF00052;lin-4;ABEP02005607.1/36374-36438 7739:Branchiostoma
floridae (Florida lancelet)
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtgatgt 35
|||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatgt 31
>RF00052;lin-4;CAAB01001308.1/53300-53230 31033:Takifugu rubripes
Length = 71
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tctcaatccctgagaccctaacttgtga 32
||||| ||||||||||||||||||||||
Sbjct: 1 tctcattccctgagaccctaacttgtga 28
>RF00052;lin-4;AAZO01005184.1/24431-24501 121224:Pediculus humanus
corporis (human body louse)
Length = 71
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtgatg 34
||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatg 30
>RF00052;lin-4;ABJB010589032.1/2364-2293 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtgatg 34
||||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtgatg 30
>RF00052;lin-4;AADN02042928.1/16455-16525 9031:Gallus gallus
(chicken)
Length = 71
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtgatgttt 37
|||||||||||||||||||||| ||||
Sbjct: 7 tccctgagaccctaacttgtgaggttt 33
>RF00052;lin-4;ABRQ01036339.1/2289-2358 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtga 32
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;BX284646.4/38142-38072 7955:Danio rerio (zebrafish)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtga 32
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;CAAK05045496.1/11692-11621 7955:Danio rerio
(zebrafish)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtga 32
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;BAAE01206590.1/1293-1364 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtga 32
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;ABKQ02024066.1/14943-15012 377270:Anopheles gambiae
S
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtga 32
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;AAPU01010514.1/89504-89436 7230:Drosophila
mojavensis
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccctgagaccctaacttgtga 32
||||||||||||||||||||||
Sbjct: 7 tccctgagaccctaacttgtga 28
>RF00052;lin-4;AADG05003176.1/75746-75815 7460:Apis mellifera
(honey bee)
Length = 70
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 ccctgagaccctaacttgtga 32
|||||||||||||||||||||
Sbjct: 8 ccctgagaccctaacttgtga 28
