miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 133 bits (67), Expect = 4e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 1 cctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtagg 60
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 3 cctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtagg 62
Query: 61 gcgaaaagccatgggctac 79
|||||||||||||||||||
Sbjct: 63 gcgaaaagccatgggctac 81
>RF00246;mir-135;AAGU02576112.1/3465-3375 9785:Loxodonta africana
(African savanna elephant)
Length = 91
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
|||||||| || |||||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 4 ctctgctgcggcctatggcttttcattcctatgtgattgctgttcccaactcatgtaggg 63
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 64 ctaaaagccatgggctaca 82
>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 89.7 bits (45), Expect = 5e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 ctctgctgtggcctatggctttttattcctatgtgattgctgctttgaactcatgtaggg 63
Query: 62 cgaaaagccatgggctacacagagg 86
| |||||||||||||||| |||||
Sbjct: 64 ctgaaagccatgggctacagagagg 88
>RF00246;mir-135;AAPE01018078.1/3690-3601 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 2 ctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtaggg 61
||||||||||| |||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 4 ctctgctgtggcctatggcttttcattcctatgtgattgccgttg-gaactcatgtaggg 62
Query: 62 cgaaaagccatgggctaca 80
| |||||||||||||||||
Sbjct: 63 ctaaaagccatgggctaca 81
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 7 ctgtggtttatggctttttattcctatgtgattg 40
||||| ||||||||||||||||||||||||||||
Sbjct: 9 ctgtgctttatggctttttattcctatgtgattg 42
>RF00246;mir-135;CR931939.21/9836-9927 7955:Danio rerio
(zebrafish)
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 4 ctgctgtggtttatggctttttattcctatgtgatt 39
|||||||| ||||||||||| |||||||||||||||
Sbjct: 6 ctgctgtgttttatggctttctattcctatgtgatt 41
>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
(chicken)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 15 tttatggctttttattcctatgtgat 40
>RF00246;mir-135;AAPN01299361.1/1140-1229 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 6 gctgtggtttatggctttttattcctatgtgat 38
|||||| | ||||||||||||||||||||||||
Sbjct: 8 gctgtgctctatggctttttattcctatgtgat 40
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;ABQF01031688.1/17601-17511 59729:Taeniopygia
guttata
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;AADN02056441.1/1410-1500 9031:Gallus gallus
(chicken)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;CR352232.20/105648-105557 7955:Danio rerio
(zebrafish)
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 ctgtggtttatggctttttattcctatgtgatt 39
||||| ||||||||||| |||||||||||||||
Sbjct: 9 ctgtgctttatggctttctattcctatgtgatt 41
>RF00246;mir-135;CAAB01002540.1/26990-26899 31033:Takifugu
rubripes
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtgat 38
|||||||||||||||||||||||||
Sbjct: 16 ttatggctttttattcctatgtgat 40
>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtgat 38
|||||||||||||||||||||||||
Sbjct: 16 ttatggctttttattcctatgtgat 40
>RF00246;mir-135;CR381618.15/176832-176743 7955:Danio rerio
(zebrafish)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtga 37
||||||||||||||||||||||||
Sbjct: 16 ttatggctttttattcctatgtga 39
>RF00246;mir-135;AANH01001634.1/39339-39250 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;BAAF04004921.1/4146-4237 8090:Oryzias latipes
(Japanese medaka)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 4 ctgctgtggtttatggctttttattcctatgtgatt 39
|||||||| |||||||||| |||||||||||||||
Sbjct: 6 ctgctgtgtcttatggctttctattcctatgtgatt 41
>RF00246;mir-135;AAVX01218173.1/698-790 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
