miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25966_gga-mir-146b:mirbase
Length = 105
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 tgcttggctctgagaactgaattccataggcgttgaagcctcc-aaaatgccctatggat 59
||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 9 tgcttggctttgagaactgaattccataggcgttaaagcatccaaaaatgccctatggat 68
Query: 60 tcagttctgcag 71
||||||||||||
Sbjct: 69 tcagttctgcag 80
>31504_oan-mir-146b:mirbase
Length = 109
Score = 61.9 bits (31), Expect = 5e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tgcttggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||||||
Sbjct: 15 tgcttggctctgagaactgaattccataggc 45
>27048_eca-mir-146b:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 3 tggctctgagaactgaattccataggc 29
>27047_eca-mir-146b:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 3 tggctctgagaactgaattccataggc 29
>27395_mdo-mir-146b:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 2 tggctctgagaactgaattccataggc 28
>31880_mmu-mir-146b:mirbase
Length = 109
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 23 tggctctgagaactgaattccataggc 49
>33233_bta-mir-146b:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 20 tggctctgagaactgaattccataggc 46
>33997_ssc-mir-146b:mirbase
Length = 99
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 15 tggctctgagaactgaattccataggc 41
>27752_mml-mir-146b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 3 tggcactgagaactgaattccataggc 29
>27753_mml-mir-146b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 3 tggcactgagaactgaattccataggc 29
>28467_hsa-mir-146b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 3 tggcactgagaactgaattccataggc 29
>28468_hsa-mir-146b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 3 tggcactgagaactgaattccataggc 29
>30239_ptr-mir-146b:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 2 tggcactgagaactgaattccataggc 28
>30851_ppy-mir-146b:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 3 tggcactgagaactgaattccataggc 29
>30852_ppy-mir-146b:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 3 tggcactgagaactgaattccataggc 29
>32753_rno-mir-146b:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 9 tggccctgagaactgaattccataggc 35
>25796_xtr-mir-146b:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 ggctctgagaactgaattccat 27
||||||||||||||||||||||
Sbjct: 16 ggctctgagaactgaattccat 37
>25497_pma-mir-146:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgagaactgaattccataggc 31
|||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggc 29
>25967_gga-mir-146c-1:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 gctctgagaactgaattccat 27
|||||||||||||||||||||
Sbjct: 30 gctctgagaactgaattccat 50
>25968_gga-mir-146c-2:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 gctctgagaactgaattccat 27
|||||||||||||||||||||
Sbjct: 30 gctctgagaactgaattccat 50
>26475_tgu-mir-146a:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 gctctgagaactgaattccat 27
|||||||||||||||||||||
Sbjct: 25 gctctgagaactgaattccat 45
>26721_cfa-mir-146b:mirbase
Length = 61
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgagaactgaattccataggc 31
|||||||||||||||||||||
Sbjct: 1 tgagaactgaattccataggc 21
>31879_mmu-mir-146a:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 gctctgagaactgaattccat 27
|||||||||||||||||||||
Sbjct: 2 gctctgagaactgaattccat 22
>32752_rno-mir-146a:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 gctctgagaactgaattccat 27
|||||||||||||||||||||
Sbjct: 13 gctctgagaactgaattccat 33
>25795_xtr-mir-146:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgagaactgaattccatagg 30
||||||||||||||||||||
Sbjct: 18 tgagaactgaattccatagg 37
>33232_bta-mir-146a:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgagaactgaattccatagg 30
||||||||||||||||||||
Sbjct: 21 tgagaactgaattccatagg 40
>34318_dre-mir-146a:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 ctgagaactgaattccatag 29
||||||||||||||||||||
Sbjct: 24 ctgagaactgaattccatag 43
>34319_dre-mir-146b-1:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 cttggctctgagaactgaattcca 26
||||||| ||||||||||||||||
Sbjct: 4 cttggctttgagaactgaattcca 27
>34320_dre-mir-146b-2:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 cttggctctgagaactgaattcca 26
||||||| ||||||||||||||||
Sbjct: 4 cttggctttgagaactgaattcca 27
