miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00691;mir-146;ABQF01027036.1/15002-14913 59729:Taeniopygia
guttata
Length = 90
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 tgcttggctctgagaactgaattccataggcgttgaagcctccaaaatgccctatggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tgcttggctctgagaactgaattccataggcgttgaagcctccaaaatgccctatggatt 65
Query: 61 cagttctgcagc 72
||||||||||||
Sbjct: 66 cagttctgcagc 77
>RF00691;mir-146;AADN02030809.1/7252-7342 9031:Gallus gallus
(chicken)
Length = 91
Score = 103 bits (52), Expect = 3e-22
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 tgcttggctctgagaactgaattccataggcgttgaagcctcc-aaaatgccctatggat 59
||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 6 tgcttggctttgagaactgaattccataggcgttaaagcatccaaaaatgccctatggat 65
Query: 60 tcagttctgcag 71
||||||||||||
Sbjct: 66 tcagttctgcag 77
>RF00691;mir-146;AAPN01141106.1/3079-3169 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tgcttggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||||||
Sbjct: 7 tgcttggctctgagaactgaattccataggc 37
>RF00691;mir-146;AAFR03025019.1/59830-59741 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AANG01052378.1/2905-2994 9685:Felis catus
(domestic cat)
Length = 90
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AAEX02015545.1/16918-16829 9615:Canis lupus
familiaris (dog)
Length = 90
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;ABDC01238493.1/6154-6243 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;ABRO01069912.1/224-312 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AAIY01333564.1/1864-1775 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 90
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AAGU02025916.1/485-574 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||||||||||
Sbjct: 10 tggctctgagaactgaattccataggc 36
>RF00691;mir-146;AAWZ01011696.1/200150-200239 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gctctgagaactgaattccataggc 31
|||||||||||||||||||||||||
Sbjct: 12 gctctgagaactgaattccataggc 36
>RF00691;mir-146;ABBA01063157.1/877-789 9606:Homo sapiens (human)
Length = 89
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 10 tggcactgagaactgaattccataggc 36
>RF00691;mir-146;AAYZ01153033.1/3261-3350 9978:Ochotona princeps
(American pika)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||||||||||||||||||| ||||||
Sbjct: 10 tggctctgagaactgaattctataggc 36
>RF00691;mir-146;ABRQ01378994.1/1874-1963 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggctctgagaactgaattccataggc 31
|||| ||||||||||||||||||||||
Sbjct: 10 tggccctgagaactgaattccataggc 36
>RF00691;mir-146;CAAA01220328.1/4488-4574 10090:Mus musculus
(house mouse)
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 gctctgagaactgaattccat 27
|||||||||||||||||||||
Sbjct: 12 gctctgagaactgaattccat 32
>RF00691;mir-146;AADN02043396.1/1249-1345 9031:Gallus gallus
(chicken)
Length = 97
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 gctctgagaactgaattccat 27
|||||||||||||||||||||
Sbjct: 14 gctctgagaactgaattccat 34
