miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 145 ttgggtcctgccttgcatcaactgaattggagaccgctgtgaaa 188
|||| ||| |||||||||||||||||| ||||||||| ||||||
Sbjct: 33 ttggatcccgccttgcatcaactgaatcggagaccgcggtgaaa 76
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 145 ttgggtcctgccttgcatcaactgaattggagaccgctgtgaa 187
|||| ||| |||||||||||||||||| ||||||||| |||||
Sbjct: 112 ttggatcccgccttgcatcaactgaatcggagaccgcggtgaa 154
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 18 ctcttattcgcttggtgcaggtcgggacctcattcg 53
|||| |||||||||||||||||||||| || |||||
Sbjct: 12 ctctaattcgcttggtgcaggtcgggaactgattcg 47
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 18 ctcttattcgcttggtgcaggtcgggacctcattcg 53
|||| |||||||||||||||||||||| || |||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaactgattcg 47
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 145 ttgggtcctgccttgcatcaactgaattggagaccgctgtgaa 187
|||| ||| |||||||||||||||||| |||| |||| |||||
Sbjct: 136 ttggatcccgccttgcatcaactgaatcggaggccgcggtgaa 178
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 cctcttattcgcttggtgcaggtcggga 44
||||| ||||||||||||||||||||||
Sbjct: 11 cctctgattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcgggac 45
|||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggac 39
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctcttattcgcttggtgcaggtcggga 44
|||| ||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 150 tcctgccttgcatcaactgaattggag 176
|||||||||||||||||||||| ||||
Sbjct: 88 tcctgccttgcatcaactgaatcggag 114
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctcttattcgcttggtgcaggtcggga 44
|||| ||||||||||||||||||||||
Sbjct: 12 ctctaattcgcttggtgcaggtcggga 38
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctcttattcgcttggtgcaggtcggga 44
|||| ||||||||||||||||||||||
Sbjct: 12 ctctaattcgcttggtgcaggtcggga 38
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 145 ttgggtcctgccttgcatcaactgaattggagaccgctgtgaa 187
|||| ||| |||||||||||||||||| |||| |||| |||||
Sbjct: 78 ttggatcccgccttgcatcaactgaatcggaggccgcggtgaa 120
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctcttattcgcttggtgcaggtcggga 44
|||| ||||||||||||||||||||||
Sbjct: 12 ctctaattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
subsp. pekinensis
Length = 137
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana
(thale cress)
Length = 142
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 attcgcttggtgcaggtcggga 44
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
