miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gcgtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gcgtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtga 71
Query: 61 tcgttggcagcc 72
||||||||||||
Sbjct: 72 tcgttggcagcc 83
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 95.6 bits (48), Expect = 7e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgatc 73
Query: 63 gttggcag 70
|||||||
Sbjct: 74 attggcag 81
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 95.6 bits (48), Expect = 7e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct: 14 gtcatttttgtggtttgcagctagtactctggctccagttgcatagtcacaaaaatgagc 73
Query: 63 gttggcag 70
|||||||
Sbjct: 74 attggcag 81
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 93.7 bits (47), Expect = 3e-19
Identities = 64/67 (95%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaat-ctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatttgcagctagtaatcctggc-ccagttgcatagtcacaaaagtgat 72
Query: 62 cgttggc 68
| |||||
Sbjct: 73 cattggc 79
>RF00650;mir-153;BX323042.7/121254-121169 7955:Danio rerio
(zebrafish)
Length = 86
Score = 83.8 bits (42), Expect = 3e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaa 56
|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 14 gtcatttttgtggtttgcagctagtagtctggttccagttgcatagtcacaaaa 67
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 79.8 bits (40), Expect = 4e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgatttgcagctagtaatctggctccagttgcatagtcacaaaagtgatc 62
|||||| ||||| |||||| |||||| ||||||||||||||||||||||||||| |||||
Sbjct: 14 gtcattcttgtggtttgcaactagtagtctggctccagttgcatagtcacaaaaatgatc 73
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 75.8 bits (38), Expect = 6e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtgat 73
Query: 62 cgttgg 67
| ||||
Sbjct: 74 cattgg 79
>RF00650;mir-153;AAGJ02018792.1/5926-5834 7668:Strongylocentrotus
purpuratus
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 agttgcatagtcacaaaagtgat 61
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>RF00650;mir-153;ABJB010903342.1/3344-3261 6945:Ixodes scapularis
(black-legged tick)
Length = 84
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 ttgcatagtcacaaaagtgat 61
|||||||||||||||||||||
Sbjct: 51 ttgcatagtcacaaaagtgat 71
