miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;AADN02026326.1/5940-5866 9031:Gallus gallus
(chicken)
Length = 75
Score = 125 bits (63), Expect = 8e-29
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgtt 62
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttgagaactaagaaaaaccatcgaccgtt 60
Query: 63 gactgtacctt 73
|||||||||||
Sbjct: 61 gactgtacctt 71
>RF00076;mir-181;AAPN01414527.1/5237-5163 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 95.6 bits (48), Expect = 7e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgttgactgta 69
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgagatagagaagaaaccatcgaccgttgactgta 67
Query: 70 cctt 73
||||
Sbjct: 68 cctt 71
>RF00076;mir-181;AAWZ01041904.1/21191-21117 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgtt 62
|||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttggaatcgagagcaaaccatcgaccgtt 60
Query: 63 gactgtacctt 73
|||||||||||
Sbjct: 61 gactgtacctt 71
>RF00076;mir-181;AAVX01524458.1/119-46 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgtt 62
|||||||||||||||||||||||||||||||||| || ||| | ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttgggatttag-atgaaccatcgaccgtt 59
Query: 63 gactgtacc 71
|||||||||
Sbjct: 60 gactgtacc 68
>RF00076;mir-181;AAFR03041358.1/50589-50664 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 79.8 bits (40), Expect = 4e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgag-tttgagaactagaaaaaaccatcgaccgt 61
|||||||||||||||||||||||||||||| ||| ||| || || ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttttagatttaaaagaaaccatcgaccgt 60
Query: 62 tgactgtacctt 73
||||||| ||||
Sbjct: 61 tgactgtgcctt 72
>RF00076;mir-181;BAAE01064819.1/183-106 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 79.8 bits (40), Expect = 4e-15
Identities = 62/67 (92%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagtttgag--aactagaa-aaaaccatcgaccgttga 64
||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttgagctaaattgaagaaaaccatcgaccgttga 65
Query: 65 ctgtacc 71
|||||||
Sbjct: 66 ctgtacc 72
>RF00076;mir-181;ABRO01503714.1/705-629 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgagaactagaaa--aaaccatcgaccgttgactg 67
||||||||||||||||||||||||||| ||| || ||| |||||| |||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgggaattaaaaaagaaaccaccgaccgttgactg 67
Query: 68 tacctt 73
||||||
Sbjct: 68 tacctt 73
>RF00076;mir-181;CAAK05046427.1/2246-2169 7955:Danio rerio
(zebrafish)
Length = 78
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 5 tcagtgaacattcaacgctgtcggtgagtttgag--aactag-aaaaaaccatcgaccgt 61
|||||||||||||||||||||||||||||||||| || | | |||||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagtttgagctaaatggaaaaaaaccatcgaccgt 62
Query: 62 tgactgtacc 71
||| ||||||
Sbjct: 63 tgattgtacc 72
>RF00076;mir-181;ABRQ01199017.1/7675-7601 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 73.8 bits (37), Expect = 3e-13
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 9 tgaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgttgactgt 68
|||||||||||||||||||||||||||| | | | |||||||||| |||||||||||||
Sbjct: 8 tgaacattcaacgctgtcggtgagtttg-ggatttgaaaaaaccactgaccgttgactgt 66
Query: 69 acctt 73
|||||
Sbjct: 67 acctt 71
>RF00076;mir-181;ABQF01033784.1/94537-94612 59729:Taeniopygia
guttata
Length = 76
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/71 (90%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttgagaact--agaaaaaaccatcgaccg 60
|||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttg-gaattaaagtgaaaaccatcgaccg 59
Query: 61 ttgactgtacc 71
|||| ||||||
Sbjct: 60 ttgattgtacc 70
>RF00076;mir-181;CAAE01007899.1/3116-3043 99883:Tetraodon
nigroviridis
Length = 74
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgttgactg 67
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttga-cactgaacgaaaccatcgaccgttgactg 64
Query: 68 tacc 71
||||
Sbjct: 65 tacc 68
>RF00076;mir-181;AANH01010005.1/225761-225835 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgttgactg 67
||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttgagctttgaccaaaaccatcgaccgttgactg 65
Query: 68 tacc 71
||||
Sbjct: 66 tacc 69
>RF00076;mir-181;CR407590.7/46720-46647 7955:Danio rerio
(zebrafish)
Length = 74
Score = 69.9 bits (35), Expect = 4e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgttgactgt 68
|||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttttagacattg-aaaaaccatcgaccgttgactgt 65
>RF00076;mir-181;BAAE01247698.1/2692-2765 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgttgactgta 69
||||||||||||||||||||||||||| || |||| |||||||||| |||||| ||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgtgacaaagaagaaaccatcgagcgttgagtgta 67
Query: 70 cc 71
||
Sbjct: 68 cc 69
>RF00076;mir-181;BAAE01046132.1/387-313 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/64 (90%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgagaactagaa--aaaaccatcgaccgttgactg 67
||||||||||||||||||||||||||| | ||| || |||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgtg--ctacaatcaaaaccatcgaccgttgactg 65
Query: 68 tacc 71
||||
Sbjct: 66 tacc 69
>RF00076;mir-181;AAVX01060902.1/6914-6990 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 3 cttcagtgaacattcaacgctgtcggtgagtttg 36
||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcagtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAVX01605662.1/457-382 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 61.9 bits (31), Expect = 1e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 4 ttcagtgaacattcaacgctgtcggtgagtttga-gaactagaaaaaaccatcgaccgtt 62
||||| |||||||||||||||||||||||||||| | | | | |||||||||||||||
Sbjct: 2 ttcagggaacattcaacgctgtcggtgagtttgatgctattggagaaaccatcgaccgtt 61
Query: 63 gactgtacctt 73
|| ||||||||
Sbjct: 62 gattgtacctt 72
>RF00076;mir-181;ABRR01288494.1/77-2 30538:Lama pacos (alpaca)
Length = 76
Score = 60.0 bits (30), Expect = 4e-09
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgttg 63
||||||||||||||||||||||||||| | | | |||||||||| |||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg-ggatttgaaaaaaccaccgaccgttg 60
>RF00076;mir-181;CAAE01007782.1/1794-1718 99883:Tetraodon
nigroviridis
Length = 77
Score = 60.0 bits (30), Expect = 4e-09
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgagaact-ag-aaaaaaccatcgaccgttgactg 67
||||||||||||||||||||||||||| ||| || ||||||||||||| |||||| ||
Sbjct: 8 gaacattcaacgctgtcggtgagtttggtgactcagaaaaaaaccatcgagcgttgagtg 67
Query: 68 tacctt 73
||||||
Sbjct: 68 tacctt 73
>RF00076;mir-181;ABPN01054789.1/181-255 163638:Rhamphochromis esox
Length = 75
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgagaactagaaaaaaccatcgaccgttgactgta 69
||||||||||||||||||||||||||| || ||| ||||||||||| ||||| ||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgtgactcagagaaaaccatcgagtgttgagtgta 67
Query: 70 cc 71
||
Sbjct: 68 cc 69
>RF00076;mir-181;AANH01003633.1/162880-162804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 6 cagtgaacattcaacgctgtcggtgagttt 35
||||||||||||||||||||||||||||||
Sbjct: 4 cagtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
(tammar wallaby)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttgag 38
|||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgag 36
>RF00076;mir-181;BX649502.4/41327-41254 7955:Danio rerio
(zebrafish)
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tcagtgaacattcaacgctgtcggtgagtttg 36
|||| |||||||||||||||||||||||||||
Sbjct: 3 tcagagaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CU914488.12/799-875 7955:Danio rerio (zebrafish)
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagttt 35
||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AANH01005494.1/52551-52630 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 gtgaacattcaacgctgtcggtgagttt 35
||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt 33
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 aaaccatcgaccgttgactgt 68
|||||||||||||||||||||
Sbjct: 51 aaaccatcgaccgttgactgt 71
>RF00076;mir-181;BAAE01266276.1/154-232 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 56.0 bits (28), Expect = 6e-08
Identities = 55/62 (88%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 11 aacattcaacgctgtcggtgagtttgaga---actag-aaaaaaccatcgaccgttgact 66
|||||||||||||||||||||||||| | || || ||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttggtacatacgagaaaaaaaccatcgaccgttgact 68
Query: 67 gt 68
||
Sbjct: 69 gt 70
>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttg 36
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01011358.1/4650-4577 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttg 36
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CAAB01002295.1/30499-30571 31033:Takifugu
rubripes
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagtttga 37
|||||||||| |||||||||||||||||
Sbjct: 8 gaacattcaamgctgtcggtgagtttga 35
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 aaaccatcgaccgttgactgtacc 71
||||||||||||||||||||||||
Sbjct: 44 aaaccatcgaccgttgactgtacc 67
>RF00076;mir-181;CAAB01002581.1/17658-17586 31033:Takifugu
rubripes
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gaacattcaacgctgtcggtgagttt 35
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAWZ01014044.1/10482-10407 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 aacattcaacgctgtcggtgagttt 35
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01009059.1/35-115 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 aacattcaacgctgtcggtgagttt 35
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 aaaaaccatcgaccgttgactgt 68
|||||||||||||||||||||||
Sbjct: 50 aaaaaccatcgaccgttgactgt 72
>RF00076;mir-181;AAIY01317332.1/8-77 9371:Echinops telfairi (small
Madagascar hedgehog)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 5 tcagtgaacattcaacgctgtcggtgagtt 34
||||||||||| ||||||||||||||||||
Sbjct: 3 tcagtgaacat-caacgctgtcggtgagtt 31
