miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00257;mir-194;AADN02012132.1/23965-23883 9031:Gallus gallus
(chicken)
Length = 83
Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tgctctcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgt 64
Query: 61 tacttttgat 70
||||||||||
Sbjct: 65 tacttttgat 74
>RF00257;mir-194;AAPN01089469.1/14273-14191 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 93.7 bits (47), Expect = 3e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 6 tcatatgtaacagcaactccatgtggactacactgacttccagtggagatgctgttactt 65
||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 10 tcatatgtaacagcaactccatgtggattatgctgatttccagtggagaggctgttactt 69
Query: 66 ttgatgg 72
|||||||
Sbjct: 70 ttgatgg 76
>RF00257;mir-194;AAGU02014260.1/2999-2915 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 75.8 bits (38), Expect = 6e-14
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 10 atgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttactttt 67
|||||||||||||||||||||||| | || |||||||||||| |||||||||||||||
Sbjct: 14 atgtaacagcaactccatgtggaccaggtaccgacttccagtggggatgctgttactttt 73
Query: 68 gatgg 72
|||||
Sbjct: 74 gatgg 78
>RF00257;mir-194;AAIY01186786.1/2214-2298 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 69.9 bits (35), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 10 atgtaacagcaactccatgtggactaca-ctgacttccagtggagatgctgttacttttg 68
||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 atgtaacagcaactccatgtggactgtgtctaatttccagtggagatgctgttacttttg 74
Query: 69 atg 71
|||
Sbjct: 75 atg 77
>RF00257;mir-194;AY866323.1/164-248 9545:Macaca nemestrina
(pig-tailed macaque)
Length = 85
Score = 65.9 bits (33), Expect = 6e-11
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactac--actgacttccagtggagatgctgttacttttg 68
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttacttttg 74
Query: 69 atgg 72
||||
Sbjct: 75 atgg 78
>RF00257;mir-194;AAWZ01016377.1/110498-110415 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactacactgacttccagtggagatgctgttacttttga 69
|||||||||||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggaataagtagatttccagtggaggtgctgttacttttga 74
>RF00257;mir-194;AAFC03085979.1/1394-1478 9913:Bos taurus (cattle)
Length = 85
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 43 ttccagtggagatgctgttacttttgatgg 72
||||||||||||||||||||||||||||||
Sbjct: 49 ttccagtggagatgctgttacttttgatgg 78
>RF00257;mir-194;CAAA01010876.1/4210-4293 10090:Mus musculus
(house mouse)
Length = 84
Score = 54.0 bits (27), Expect = 2e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggactacact-gacttccagtggagatgctgttacttttga 69
|||||||||||||||||||||||| || | ||||||||||| ||||||||||| |||
Sbjct: 15 tgtaacagcaactccatgtggactgtgctcggattccagtggagctgctgttacttctga 74
Query: 70 tgg 72
|||
Sbjct: 75 tgg 77
>RF00257;mir-194;AANN01206173.1/2762-2845 9365:Erinaceus europaeus
(western European hedgehog)
Length = 84
Score = 52.0 bits (26), Expect = 9e-07
Identities = 56/65 (86%), Gaps = 7/65 (10%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggact----acactgacttccagtggagatgctgttacttt 66
|||||||||||||||||||||||| ||| | |||||||||||||||||||| |||
Sbjct: 15 tgtaacagcaactccatgtggactgtgtacaat---ttccagtggagatgctgttatttt 71
Query: 67 tgatg 71
|||||
Sbjct: 72 tgatg 76
>RF00257;mir-194;ABRO01051746.1/2439-2355 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggact 34
||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggact 38
>RF00257;mir-194;AALT01482191.1/6150-6232 42254:Sorex araneus
(European shrew)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtggac 33
|||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggac 37
>RF00257;mir-194;CAAB01000046.1/113108-113195 31033:Takifugu
rubripes
Length = 88
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgtaacagcaactccatgtgga 32
|||||||||||||||||||||||
Sbjct: 15 atgtaacagcaactccatgtgga 37
>RF00257;mir-194;AANH01000564.1/249696-249610 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgtaacagcaactccatgtgga 32
|||||||||||||||||||||||
Sbjct: 15 atgtaacagcaactccatgtgga 37
>RF00257;mir-194;BAAE01291848.1/854-770 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgtaacagcaactccatgtgga 32
|||||||||||||||||||||||
Sbjct: 15 atgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAPN01023116.1/334-252 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AAGV020435009.1/201-286 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAFC03033465.1/1804-1720 9913:Bos taurus (cattle)
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABRN01259841.1/10643-10728 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AC127556.4/107031-107116 10090:Mus musculus
(house mouse)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABRO01037016.1/11275-11359 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAYZ01125558.1/495-410 9978:Ochotona princeps
(American pika)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAIY01704218.1/1027-942 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABRQ01130986.1/8094-8179 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;BX248510.4/109392-109307 7955:Danio rerio
(zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgga 32
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABQO010307678.1/134-48 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgtaacagcaactccatgtgg 31
|||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgg 36
