miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 198 bits (100), Expect = 1e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 6 cggagatcctgctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgta 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggagatcctgctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgta 60
Query: 66 cagtagtctgcacattggttagactgggcaagggaaagcg 105
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagtagtctgcacattggttagactgggcaagggaaagcg 100
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 145 bits (73), Expect = 2e-34
Identities = 88/93 (94%)
Strand = Plus / Plus
Query: 12 tcctgctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtag 71
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7 tcctgctccgtcggcccagtgttcagactacctgttcaggacaatattgttgtacagtag 66
Query: 72 tctgcacattggttagactgggcaagggaaagc 104
||||||||||||||||| |||||| ||||||||
Sbjct: 67 tctgcacattggttagattgggcatgggaaagc 99
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 111 bits (56), Expect = 2e-24
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 12 tcctgctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtag 71
|||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 7 tcctgctccgtcatcccagtgttcagactacctgttcaggatcatactggtgtacagtag 66
Query: 72 tctgcacattggttagactg 91
||||||||||||||||||||
Sbjct: 67 tctgcacattggttagactg 86
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 99.6 bits (50), Expect = 9e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 12 tcctgctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtag 71
|||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 7 tcctgctccgtcatcccagtgttcagactacctgttcaggattttactggtgtacagtag 66
Query: 72 tctgcacattggttagac 89
||||||||||||||||||
Sbjct: 67 tctgcacattggttagac 84
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 97.6 bits (49), Expect = 3e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 11 atcctgctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagta 70
||||||||||||| ||||||||||||||||||||||||| | | ||| |||||||||
Sbjct: 6 atcctgctccgtcatcccagtgttcagactacctgttcagaatcttcctggtgtacagta 65
Query: 71 gtctgcacattggttagactg 91
|||||||||||||||||||||
Sbjct: 66 gtctgcacattggttagactg 86
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 95.6 bits (48), Expect = 1e-19
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 16 gctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctg 75
|||||||| |||||||||||||||||||||||| | || ||| ||||||||||||||
Sbjct: 11 gctccgtccacccagtgttcagactacctgttcattatcatactggtgtacagtagtctg 70
Query: 76 cacattggttagactgggca 95
||||||||||||||||||||
Sbjct: 71 cacattggttagactgggca 90
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 93.7 bits (47), Expect = 5e-19
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 12 tcctgctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtag 71
||||||||| |||||| ||||||||||||||||||| ||||||||| |||| |||| ||
Sbjct: 7 tcctgctccttcgccc-agtgttcagactacctgttaaggacaatgtcgttgcacagcag 65
Query: 72 tctgcacattggttagactgggcaagg 98
||||||||| ||||||||||| |||||
Sbjct: 66 tctgcacatcggttagactggacaagg 92
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 93.7 bits (47), Expect = 5e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 13 cctgctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtagt 72
||||||||||| |||||||||||||||||||||||| || ||| |||||||||||
Sbjct: 8 cctgctccgtccacccagtgttcagactacctgttcattgtcatactggtgtacagtagt 67
Query: 73 ctgcacattggttagactgggca 95
|||||||||||||||||||||||
Sbjct: 68 ctgcacattggttagactgggca 90
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 17 ctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgc 76
||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 11 ctccgtctgcccagtgttcagactacctgttcaggactacgagattgtacagtagtctgc 70
Query: 77 acattggttag 87
|||||||||||
Sbjct: 71 acattggttag 81
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 85.7 bits (43), Expect = 1e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 16 gctccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctg 75
|||||||| |||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct: 11 gctccgtccacccagtgttcagactacctgttcattgtcatactggtgtacagtagtctg 70
Query: 76 cacattggttagactgggc 94
|||||||||||||||||||
Sbjct: 71 cacattggttagactgggc 89
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 77.8 bits (39), Expect = 3e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 85
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggtt 80
Query: 86 agactgg 92
|| ||||
Sbjct: 81 aggctgg 87
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 77.8 bits (39), Expect = 3e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 85
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggtt 79
Query: 86 agactgg 92
|| ||||
Sbjct: 80 aggctgg 86
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 77.8 bits (39), Expect = 3e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 85
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggtt 80
Query: 86 agactgg 92
|| ||||
Sbjct: 81 aggctgg 87
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgct--gttgtacagtagtctgcacattgg 83
||||||||||||||||||||| ||||| | ||| | ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgtccaggagattgcaaaggtgtacagtagtctgcacattgg 80
Query: 84 ttagactgggc 94
|||| ||||||
Sbjct: 81 ttaggctgggc 91
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgct--gttgtacagtagtctgcacattgg 83
||||||||||||||||||||||||||| | | | ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcacattgg 80
Query: 84 ttagactgggc 94
|||||||||||
Sbjct: 81 ttagactgggc 91
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 71.9 bits (36), Expect = 2e-12
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgtt-gtacagtagtctgcacattggt 84
||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttcagga-attagtgtttgtacagtagtctgcacattggt 78
Query: 85 tagactgg 92
||| ||||
Sbjct: 79 taggctgg 86
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 67.9 bits (34), Expect = 3e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 85
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagggcgtagagattgtacagtagtctgcacattggtt 80
Query: 86 ag 87
||
Sbjct: 81 ag 82
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 85
||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 20 cccagtgtttagactacctgttcaggactcccaaattgtacagtagtctgcacattggtt 79
Query: 86 agactgggc 94
|| ||||||
Sbjct: 80 aggctgggc 88
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 63.9 bits (32), Expect = 5e-10
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcagga--caatgctgttgtacagtagtctgcacattgg 83
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggcgcctctgcatgtgtacagtagtctgcacattgg 80
Query: 84 ttagactgggc 94
|||| ||||||
Sbjct: 81 ttaggctgggc 91
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 60.0 bits (30), Expect = 8e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgt-tgtacagtagtctgcacattggt 84
||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctgggacatgtacagtagtctgcacattggt 80
Query: 85 tagactgggc 94
||| ||||||
Sbjct: 81 taggctgggc 90
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 61 ttgtacagtagtctgcacattggttagactgggc 94
||||||||||||||||||||||||||| ||||||
Sbjct: 55 ttgtacagtagtctgcacattggttaggctgggc 88
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 60.0 bits (30), Expect = 8e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 85
|||||||||||||||||||||||| | ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcatcaggctgcagctgaacagtagtctgcacattggtt 80
Query: 86 ag 87
||
Sbjct: 81 ag 82
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttagactgggc 94
|||||||||||||||||||||||||| ||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctgggc 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcagg 51
||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagg 46
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttagactgggc 94
|||||||||||||||||||||||||| ||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctgggc 91
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttagactgggc 94
|||||||||||||||||||||||||| ||||||
Sbjct: 58 tgtacagtagtctgcacattggttaggctgggc 90
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 58.0 bits (29), Expect = 3e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 85
|||||||||||||||||||||||| | ||| | || ||||||||| |||||||||||
Sbjct: 20 cccagtgttcagactacctgttcatcatgctgcagctgaacagtagtccgcacattggtt 79
Query: 86 agactgggc 94
|| ||||||
Sbjct: 80 aggctgggc 88
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 63 gtacagtagtctgcacattggttagactgggc 94
||||||||||||||||||||||||| ||||||
Sbjct: 60 gtacagtagtctgcacattggttaggctgggc 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcagg 51
||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagg 46
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 54.0 bits (27), Expect = 5e-07
Identities = 61/70 (87%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcag--gacaatgctgttgtacagtagtctgcacattgg 83
||||||||||||||||||||||||| | | || || |||||||||||||||||| |||
Sbjct: 21 cccagtgttcagactacctgttcaggcggctgtgatg-tgtacagtagtctgcacactgg 79
Query: 84 ttagactggg 93
|||| |||||
Sbjct: 80 ttaggctggg 89
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcagg 51
||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagg 46
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttag 87
||||||||||||||||||||||||||
Sbjct: 58 tgtacagtagtctgcacattggttag 83
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 65 acagtagtctgcacattggttagactgggc 94
||||||||||||||||||||||| ||||||
Sbjct: 60 acagtagtctgcacattggttaggctgggc 89
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttagactgggc 94
|||||||||||| ||||||||||||| ||||||
Sbjct: 54 tgtacagtagtcagcacattggttaggctgggc 86
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 50.1 bits (25), Expect = 7e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgcacattggtt 85
|||||||||||||||||||||||| | | | | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacattggtt 80
Query: 86 a 86
|
Sbjct: 81 a 81
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cccagtgttcagactacctgttc 48
|||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttc 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 acagtagtctgcacattggttag 87
|||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttag 82
