miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AADN02040853.1/32451-32527 9031:Gallus gallus
(chicken)
Length = 77
Score = 113 bits (57), Expect = 4e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 14 ctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctgg 73
|||||||||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct: 1 ctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgtctgg 60
Query: 74 taacgatgtttaaaggg 90
|||||||||||||||||
Sbjct: 61 taacgatgtttaaaggg 77
>RF00241;mir-8;AAPN01278104.1/1392-1318 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 93.7 bits (47), Expect = 4e-19
Identities = 62/66 (93%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 18 gtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctggtaac 77
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 5 gtgggcatcttactagacagtgctggatttg--ggatctactctaacactgtctggtaac 62
Query: 78 gatgtt 83
||||||
Sbjct: 63 gatgtt 68
>RF00241;mir-8;AAWZ01036826.1/12431-12507 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 75.8 bits (38), Expect = 9e-14
Identities = 70/78 (89%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 14 ctctgtgggcatcttactagacagtgctggatttgctgcctct-actctaacactgtctg 72
|||||||| |||||||||||||||||||||||| || |||| | ||||||||||||||
Sbjct: 1 ctctgtggacatcttactagacagtgctggattgtgtg-ctctgattctaacactgtctg 59
Query: 73 gtaacgatgtttaaaggg 90
||||||||||| ||||||
Sbjct: 60 gtaacgatgttcaaaggg 77
>RF00241;mir-8;AANN01836629.1/1372-1445 9365:Erinaceus europaeus
(western European hedgehog)
Length = 74
Score = 73.8 bits (37), Expect = 3e-13
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 14 ctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctgg 73
||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||
Sbjct: 1 ctctgtgggcatcttaccggacagtgctggattttcg--ctc-actctaacactgtctgg 57
Query: 74 taacgatgtttaaagg 89
|||||||||| |||||
Sbjct: 58 taacgatgttcaaagg 73
>RF00241;mir-8;ABRQ01306924.1/1769-1693 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 14 ctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctgg 73
||||||||||||||||| ||||||||||||||| || |||||||||||||||||
Sbjct: 1 ctctgtgggcatcttaccggacagtgctggatttctcagctagactctaacactgtctgg 60
Query: 74 taacgatgtttaaagg 89
|||||||||| |||||
Sbjct: 61 taacgatgttcaaagg 76
>RF00241;mir-8;AAVX01056733.1/885-961 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 65.9 bits (33), Expect = 8e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 14 ctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctgg 73
|||||||| |||||||||||||||||||||||| | | | |||||||||||||||
Sbjct: 1 ctctgtggacatcttactagacagtgctggattgcactcatagattctaacactgtctgg 60
Query: 74 taacgatgtttaa 86
|||||||||||||
Sbjct: 61 taacgatgtttaa 73
>RF00241;mir-8;AAGW01121226.1/219-144 9986:Oryctolagus cuniculus
(rabbit)
Length = 76
Score = 63.9 bits (32), Expect = 3e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 14 ctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactgtctgg 73
|||||||||||||||||| |||||||||||||| | || | ||||||||||||||||
Sbjct: 1 ctctgtgggcatcttactggacagtgctggattctcggcat-ggctctaacactgtctgg 59
Query: 74 taacgatg 81
||||||||
Sbjct: 60 taacgatg 67
>RF00241;mir-8;AALT01163752.1/983-908 42254:Sorex araneus
(European shrew)
Length = 76
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 58 ctctaacactgtctggtaacgatgtttaaagg 89
|||||||||||||||||||||||||| |||||
Sbjct: 44 ctctaacactgtctggtaacgatgttcaaagg 75
>RF00241;mir-8;BAAE01261092.1/898-975 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 ctctaacactgtctggtaacgatgttt 84
|||||||||||||||||||||||||||
Sbjct: 46 ctctaacactgtctggtaacgatgttt 72
>RF00241;mir-8;CR925720.9/83600-83676 7955:Danio rerio (zebrafish)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 tctaacactgtctggtaacgatgttt 84
||||||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatgttt 71
>RF00241;mir-8;AANH01002761.1/40227-40150 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 tctaacactgtctggtaacgatgttt 84
||||||||||||||||||||||||||
Sbjct: 47 tctaacactgtctggtaacgatgttt 72
>RF00241;mir-8;CU855953.4/78055-77979 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tctaacactgtctggtaacgatg 81
|||||||||||||||||||||||
Sbjct: 46 tctaacactgtctggtaacgatg 68
