miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00673;mir-217;AADN02046841.1/20616-20511 9031:Gallus gallus
(chicken)
Length = 106
Score = 137 bits (69), Expect = 2e-32
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 22 atgtcgcagatactgcatcaggaactgattggataataatcagtcaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 82 tgcattgccttca 94
>RF00673;mir-217;AAGW01552079.1/597-492 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 121 bits (61), Expect = 1e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 22 atgtcgcagatactgcatcaggaactgattggataagaatctgtcaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 82 tgcattgccttca 94
>RF00673;mir-217;AAEX02023028.1/182472-182367 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 113 bits (57), Expect = 3e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 22 atgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 82 tgcattgccttca 94
>RF00673;mir-217;AAPY01560156.1/2469-2364 37347:Tupaia belangeri
(northern tree shrew)
Length = 106
Score = 113 bits (57), Expect = 3e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 22 atgtcgcggatactgcatcaggaactgattggataagaatcggtcaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 82 tgcattgccttca 94
>RF00673;mir-217;AAQR01685763.1/646-752 30611:Otolemur garnettii
(small-eared galago)
Length = 107
Score = 107 bits (54), Expect = 2e-23
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcagg-aactgattggataataatcactcaccatcagttccta 59
|||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct: 22 atgtcgcagatactgcatcagggaactgattggataagaatcagtcaccatcagttcctc 81
Query: 60 atgcattgccttca 73
||||||||||||||
Sbjct: 82 atgcattgccttca 95
>RF00673;mir-217;AALT01617638.1/400-505 42254:Sorex araneus
(European shrew)
Length = 106
Score = 105 bits (53), Expect = 7e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 22 atgtcgtagatactgcatcaggaactgattggataaaaatgggtcaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 82 tgcattgccttca 94
>RF00673;mir-217;AAWZ01022332.1/98697-98592 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 105 bits (53), Expect = 7e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 22 atgtcgcagatactgcatcaggaactgattggggaataatcatgtaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 82 tgcattgccttca 94
>RF00673;mir-217;AANN01395868.1/718-823 9365:Erinaceus europaeus
(western European hedgehog)
Length = 106
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 22 atgtcgtagatactgcatcaggaactgattgtataagaatgtgccaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||||| ||||||
Sbjct: 82 tgcattaccttca 94
>RF00673;mir-217;AAIY01412982.1/1242-1137 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
|||| |||| ||||||||||||||||||| |||||| ||| |||||||||||||||||
Sbjct: 22 atgttgcaggtactgcatcaggaactgatcggataagtatctgtcaccatcagttcctaa 81
Query: 61 tgcattgccttca 73
|||| ||||||||
Sbjct: 82 tgcactgccttca 94
>RF00673;mir-217;ABRQ01669115.1/1422-1321 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 65.9 bits (33), Expect = 6e-11
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 atgtcgcagatactgcatcaggaactgattggataataatcactcaccatcagttcctaa 60
||||||||| |||||||||||||| ||| ||||||| ||| |||||||||| | ||||
Sbjct: 19 atgtcgcaggtactgcatcaggaaatgactggataaatatctgtcaccatcagct-ctaa 77
Query: 61 tgcattgccttca 73
|||||||||||||
Sbjct: 78 tgcattgccttca 90
>RF00673;mir-217;BX321898.29/71915-71810 7955:Danio rerio
(zebrafish)
Length = 106
Score = 56.0 bits (28), Expect = 6e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattggataataatcactcaccatcagttcctaatgca 64
|||||||||||||||||||||||||| ||| ||| |||||||||||| |||||
Sbjct: 30 gatactgcatcaggaactgattggatgatattcaggagccatcagttcctgatgca 85
>RF00673;mir-217;CAAB01000324.1/13656-13761 31033:Takifugu
rubripes
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattgg 32
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AANH01005109.1/22353-22248 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattgg 32
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;BAAE01230814.1/1025-922 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattgg 32
||||||||||||||||||||||||
Sbjct: 28 gatactgcatcaggaactgattgg 51
>RF00673;mir-217;ABEP02005709.1/2697-2622 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tactgcatcaggaactgattggat 34
||||||||||||||||||||||||
Sbjct: 11 tactgcatcaggaactgattggat 34
>RF00673;mir-217;AACT01012011.1/2144-2043 51511:Ciona savignyi
Length = 102
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 agatactgcatcaggaactgattgg 32
||||||||||| |||||||||||||
Sbjct: 29 agatactgcattaggaactgattgg 53
>RF00673;mir-217;AANH01011241.1/45727-45622 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 106
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 gatactgcatcaggaactgattgga 33
|||||||||||||||||||| ||||
Sbjct: 30 gatactgcatcaggaactgaatgga 54
